RNA id: AMCG00010909


Basic Information

Item Value
RNA id AMCG00010909
length 2014
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00010909
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4015598 ~ 4020921 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAGCTCTCCTTTCTCACGGTCTGATTGGCGGAAAGGAAACCAGGGTGGCGCGTTGCATCATGGGAGCCGTACTATTGGCTGGGCTCAAGCGGTTACATTTGAAATTTTTCCACAAGGAAGGGGATCACTGTGGGAGTGGAGACCTCGCTTTGTACAAATCCGCGCACAGCTGCTGCCAGGTGTCCTGTCATCATGGCTCCCAGAAAAAGGACCACCGCCAAGAGCCGCAAAAACAAACCCAAGATGGATAAGCTGGACGCCTTCCTCCACGACTTCGACAGCGAAGTTAAAACCATCATCGACAGACTGAAAGAGAAGACCAAGAGTCTCCTGAAAGATGCtgataatttatacaatctgGCCATCATCAAGCTTCCCAAGGCGGACCGGCAGCTCAACTGGATTGAATACTCGGCTCCAGAAGGAAAAACTAAAGCCATCGCAGAAGCTGCAAAGAGGGAACTGGAAAATGCAGATGTAGCCAATATCGTCTCTGAAGCACAAATTGTGCCACAAAAATCCACCAAAAAGGCAAGCAAAAGAAAAGGAGCTGTGTTGAGTTCTGCAGAGGAAGAGAATATTTCAAATAACCTGTCAACAACCAAAAAGGGTAGAGCAACTGCCAAGAAAGCCCCTTCGACGAGCAAGAAGGCCCGAGCGCTGTCTGTCAGCAAGCAGAACTCCTCCATTCGAAAGTCAACACGGAAAGCTCTGGTGACCCCAGCGAGGAGCGGACTGGACTCTTCTCTCATGGGCCCCACTCCCCTCATCACCCCGAGGTTCGATTCGAGATTGCCCAAGACGCCCGCCGTGAGGAACCCGAGACACAAGGAGAGGGTTTACAGCATCTCTGTGAACGGCAGCCCCATCGCTGGAGTGAGCAACGACATCCTCATCAACAGTATCCAGCTGCTTGCAAGTGAGATGGAGTCCGTGGACCTCAGTCAGCTGGACGAGCAGGCGGTGCAAAGCATACGGTTGCTCCAGAATCGTCTTGCGAATCTGTGTGGGAAGTGACGTCTTCAAGAGAAATAACCTAAACgttttatattgcttttgtaCAGAACAGTATCCACCCTTGACGGTgtcttgatatttttatttttttaacactttgttGTCTTGAACAATGTTGGAATGAACATGtcttcattttcaatgtttctCTCCTCCAAATCACCCTTTCTAtattgattaaatgtaaaactcaCCTTTCTTTTAACTGATCCTTGAGGAATGCTCATAGATGGTATCACAAGCAGCCGTCTGTGCTTTTAGTGATCGTTCTGCAAGGCCTTCAGTCTTATTGGCTTTggtttttatattgaaataatgctCAGTCCTCTccttttattcaattttaactAATTTTCTTCAATGTTGTTCTGTTTCAGATTTCCTCTGTGGGGTTTTCTCTCTTTCACAAATTGCTCATGTAAATATTCTGTAGTTCCGTAAATGCAACCCTTTTGTAAATATCTCGTCCATACCAGCGTGGTTGTAATGCTCCTTTTTTCGCTTTGTAACCTGTCTACGGTAGTTCATACTGTACCGtttgaaactaaaaaaaaaaataaaaaaaattctagGAGGCCTTTCGATGTGTTTCCAAATATAAAAAGATCTCTAAAAGCTTTTTAAGTGGTACAGCTGTTAAATGTGAGGGGCGCTGGGCTGAGATTGTTCAACCTTTGTCTCGTTCTAGCGCAATGTACATATCCTACATACTCAGAGACCTCAAATATCTACAATAAAGGCTTTACATCTGCTTTCGTTGTGTTGCTTTTTACCCCTTATATAGCTAAACAAAAATGGTGGCCAAATTACAGTGCATCGTATTGTTTTACCCTGTCCCCCATCAGTGTCTCTACTTTGTGAAACTAATGTCATGCTTGATTGAGAATCATGTCAGCCCTGTGATTTAGTGTGAAATTAATTCAGCCGTTTActgcatatacatttaatttgatatatttttaaaaatggcagagcaataaattacattcatCAGA

Function

GO: NA

KEGG:

id description
K11514 CDCA8; Borealin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128741 lncRNA downstream 230967 3784257 ~ 3784631 (-) True G103050
TU128714 lncRNA downstream 456205 3554183 ~ 3559393 (-) False AMCG00010901
TU128685 lncRNA downstream 590829 3420888 ~ 3424769 (-) True G103006
TU128569 lncRNA downstream 745829 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 854086 3161097 ~ 3161512 (-) True G102890
TU128784 lncRNA upstream 117699 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 129578 4150499 ~ 4150917 (-) True G103094
TU128794 lncRNA upstream 131597 4152518 ~ 4152748 (-) True G103095
TU128853 lncRNA upstream 404433 4425354 ~ 4425572 (-) True G103149
TU128989 lncRNA upstream 1094794 5115715 ~ 5129141 (-) True AMCG00010937
AMCG00010904 mRNA downstream 404053 3592656 ~ 3611545 (-) True AMCG00010904
AMCG00010902 mRNA downstream 427503 3577231 ~ 3588095 (-) True AMCG00010902
AMCG00010901 mRNA downstream 440783 3553986 ~ 3574815 (-) True AMCG00010901
AMCG00010899 mRNA downstream 491021 3514642 ~ 3524577 (-) True AMCG00010899
AMCG00010898 mRNA downstream 507603 3499002 ~ 3507995 (-) True AMCG00010898
AMCG00010910 mRNA upstream 7881 4028802 ~ 4058729 (-) True AMCG00010910
AMCG00010914 mRNA upstream 134110 4155031 ~ 4167037 (-) True AMCG00010914
AMCG00010917 mRNA upstream 269135 4290056 ~ 4291183 (-) True AMCG00010917
AMCG00010919 mRNA upstream 536632 4557553 ~ 4569654 (-) True AMCG00010919
AMCG00010921 mRNA upstream 553395 4574316 ~ 4575551 (-) True AMCG00010921
TU128662 other downstream 596422 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 596422 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 688039 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 832979 3179970 ~ 3182619 (-) True G102902
TU128350 other downstream 1254334 2758478 ~ 2761264 (-) True G102774
TU128814 other upstream 148872 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 621731 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1113289 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 1683849 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 3950703 7971624 ~ 8019522 (-) False G103832

Expression Profile