RNA id: AMCG00010910


Basic Information

Item Value
RNA id AMCG00010910
length 2618
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00010910
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4028802 ~ 4058729 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGGTGCGGTGCCGTGCGGTGCCGTGCGGGGCGGGCGGTGCGGGGGCGGGGCCGGGCGCGCGGGGCTGTGCGGGGCTCGCTCGAGGACAGTCCGCAGCTCGGGACGCGGGACGCTCGCGGCAGCAGCGCAGGGTGTGCGTGGTCGGGTCTCCGCAGTGAGAGCAGCAGCATCCTGACACGCAGCAGCTGCTCCAGTAGTGCGCTGCGCAGACACAGTGCGTGTCCCTCTCGCAGCCCCAGCAGCGGCGTTGGCGCATCTGTCGCTGCGGCTCAGGAGACTGCAGGGGCTGGCACCGACCGATGCAGCGTCCCACGTAGCCGCGGCCTCGACGTCACGCTCAAATGGGTCTCCTCCAAACACCCGGGATCTTCATGGGTTGAATGTGGAAGAGCCGAGCGATTCACTCCCCAGTCCTCTCTGGCAGCGATTATGGCTTGTGTATTTGGACAAGATGAGTGGGCGCCGCCAGCAGTAAGCAGTCACCTGCAGAGTGGAAGCGATTGCACCCATCAGCCTGCCTGTGGACCTGACCGCTGGGCAGTTACTATGCAGTTTGGACTGGTTGTGGTGCTGGTTTTCTTAAGCTTAATGGATTATACCGGCAGCCTCAAGGTCTTAAAGGGAAGGAGGCAGAGACGCATAAGCACTGAAGTCCCCCCGTCATGCTCGAGGGGCTGTGAGTTGTGCTCTGAATACAACGGGTGTCTCAAATGCCTGCCCAAACTCTTCATCCTCCTGGAGAGAAATGACATCCGACAGATCGGAGTCTGCTTGGCATCGTGTCCCATGGGATACTTTGGGGTTCGAAACCCGGACATGAACAAGTGCACCAaatgTAAAATAGACAATTGTGAGGCGTGTTTCAGTAGAAATTTTTGCACAAAATGTAAGGAAGGCTTATATTTACACAGAGGGCGATGTTACTCCAGCTGCCCAGAAGGCTTCAGCACCGCTAACGGGACAGCGGAGTGCACCAGCACGGTGCAATGCGAGCTGGGCGAGTGGGGGCCCTGGGGTCCGTGTACCAAAAAGGGCAAACTCTGTGGCTTCAGGAAGGGCACACAGAACCGGACGAGAGAGTCCCTGCAGCCCCCCAGCCTGGACCCATCCTTGTGCCCcccagaaacagaaaacaagaagtGCACTGTACAGAAAAAGCCCTGTGGCAAAGGAGaaagggggaagaaaaaggaggaaCAAGGGAATAAAGACAATAAAGAGAACGGCAAAAACAAAGGCAAGGAAGGCAAAGCCGGCGCCCGGAAGAGAAAAACCCAGCACAGGGCCACGGCCGCTCCGCCGACCACCGCTGCTGCCGCCGCCACCAGCCTGAGCCTGTAAACTCACAGAGGCTGGATCTGATGCAATAGAGCCAATTGAAATCAAGAACGACCACGGACAGGAAAAAAGTCAGTGCTGCTATGCATTAAAACCCTCCCGCAGAACTGGAGTTTCGCTGCAATAAGACCAAACTGAAGAAGGATGAGAACAAATCACAGGAGAGAAATGTACAGCGTTAATAAGTCTGTCAGATACGCGTATCTCTCCTGTGTGACAGACTGAGCACGCAATGGAAGATCCTCTTCTCTTCACTTCCTATTTAGCCTTAATCGGGGGCGTCCCACGGGGTGCCTCCGGTCCTCGTTAACgagcattttaatttgtgttgtctGACGTTACGCACAGTGCTTCACCGCCGCCGCGGGGGACTGCACACTCTGCCGAGGAGCGCGATTTAAGTTAATGGGAAACAAAGTGGACAGTATTaagatgttttaatattatgatttaaGAAAAGAAAGGCACTGGaacttgtttttggtttgtttgccaaaaaaagaagaagaattttctttttttttttttcatcctattttaaaaagtattaagaGAATATATTAAAACGTATACTTCGTGGTCTGCCGTCCGATGGGAGCGGCCACCTCACTGCTTCAGTGTTTATTTCAAGCTAAGTCATGCTCTGCTCCAAATGTCTCTTAGCACAACGTAGGGGAGGAAGGACAGACCTATATAGATGTAAATATGTACAAATGTGTTCTGTGTTAGAGGCTATATCTTATATCTGATTCTGCGGAGGAAATGGTTTTGCTGTTTTGAGGGGCAGAGAGATGAAAACgttgtgaaaaactaaataatcaAAAGACGTCTGATGTCTAGTGTGTCTTAGTCGCAGGCAAAGGTCAGGTGGACATGTATGTGTACAGTAGGTAGGTTCAGATACATTGCACTTCACTTATCCTCTGTAGTCTACAAAACTGTGTGAGAAAACGTTAAACCCAGCAGTTCCTCTGTTATACGACAATATTCGCTCATAGTGGAACGGACCAAATCaattgtatgtacattttacacGGCTCCGTCAGCTCCTCACACGTTCCGGTTCATCTGGATTATCTGCTTGTCACCAAATATTTGCATAAGACAATATTatgtgcattgttttattttatatcatttttttgtttgtggacTGTGGACACTGAACTGCCACCTGGGCTCAGTTGAGAGAGAGATCTCGTGATTCTTGTACAAAGTGTAGTAACAGTAAAGAGGGTATcatatatactttaataaaaactcaaatacaataaaca

Function

GO:

id name namespace
GO:0090263 positive regulation of canonical Wnt signaling pathway biological_process
GO:0001525 angiogenesis biological_process
GO:0048010 vascular endothelial growth factor receptor signaling pathway biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0008201 heparin binding molecular_function

KEGG:

id description
K19471 RSPO1; R-spondin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128741 lncRNA downstream 244171 3784257 ~ 3784631 (-) True G103050
TU128714 lncRNA downstream 469409 3554183 ~ 3559393 (-) False AMCG00010901
TU128685 lncRNA downstream 604033 3420888 ~ 3424769 (-) True G103006
TU128569 lncRNA downstream 759033 3268542 ~ 3269769 (-) True G102920
TU128513 lncRNA downstream 867290 3161097 ~ 3161512 (-) True G102890
TU128784 lncRNA upstream 79891 4138620 ~ 4139637 (-) True G103087
TU128793 lncRNA upstream 91770 4150499 ~ 4150917 (-) True G103094
TU128794 lncRNA upstream 93789 4152518 ~ 4152748 (-) True G103095
TU128853 lncRNA upstream 366625 4425354 ~ 4425572 (-) True G103149
TU128989 lncRNA upstream 1056986 5115715 ~ 5129141 (-) True AMCG00010937
AMCG00010909 mRNA downstream 7881 4015598 ~ 4020921 (-) True AMCG00010909
AMCG00010904 mRNA downstream 417257 3592656 ~ 3611545 (-) True AMCG00010904
AMCG00010902 mRNA downstream 440707 3577231 ~ 3588095 (-) True AMCG00010902
AMCG00010901 mRNA downstream 453987 3553986 ~ 3574815 (-) True AMCG00010901
AMCG00010899 mRNA downstream 504225 3514642 ~ 3524577 (-) True AMCG00010899
AMCG00010914 mRNA upstream 96302 4155031 ~ 4167037 (-) True AMCG00010914
AMCG00010917 mRNA upstream 231327 4290056 ~ 4291183 (-) True AMCG00010917
AMCG00010919 mRNA upstream 498824 4557553 ~ 4569654 (-) True AMCG00010919
AMCG00010921 mRNA upstream 515587 4574316 ~ 4575551 (-) True AMCG00010921
AMCG00010920 mRNA upstream 522122 4580851 ~ 4589405 (-) True AMCG00010920
TU128662 other downstream 609626 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 609626 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 701243 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 846183 3179970 ~ 3182619 (-) True G102902
TU128350 other downstream 1267538 2758478 ~ 2761264 (-) True G102774
TU128814 other upstream 111064 4169793 ~ 4185974 (-) True G103112
TU128916 other upstream 583923 4642652 ~ 4650106 (-) True AMCG00010925
TU128994 other upstream 1075481 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 1646041 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 3912895 7971624 ~ 8019522 (-) False G103832

Expression Profile