RNA id: AMCG00010916


Basic Information

Item Value
RNA id AMCG00010916
length 1418
RNA type mRNA
GC content 0.56
exon number 8
gene id AMCG00010916
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4239933 ~ 4250048 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAATCTACTGCCATTGCTTGCACAAATCAGGAATGCCTCTCAGGGCAAAAGTACAGTTCAACAAGTCCACAGTGCAAGTCTGCAGCAGCTCCTAATCAAAGGCTTTGTGATTTCTTCTGTGGAGAGGCGAGGATGCTTGATCGCACAACCTGCGTGTTCATCAGGCGTCGCCACATGCCCCGTGTGGAACAAGTCTGGACTCTACAGCAACACGGTCGTGCGGCCACGTCCCGCGGCCGGCGCTGCAGGGAGGAAGGGCGGCGGGAGGACTGCTGAGCGAGATGGAAACCACTTCGACGGCCGCACTCAAGGGTTCCTCACACACGGGCACCAGAGACTAGTGCATGGTGGCGAATCTGCTGCAGCCGATCGTCAGACGCAGTTACGCAGCGGCCGCACATGTGCGCAGTGTAACCGGCGCGGAGCTGCGGCGCTTTTACCCCAGTGTTGAGCCTTTACAGCAGCCTGAACACAATGTCGTCGTTTAGGAAAGCTTTGAAATCCAACCAGCGCAACCACAAGGAGAGATCCCAGGACGGCGTCCACGTGATCAAGCAGCCCGAAGAGGAGGTGACGGAGGAGCAGAGGAAGCTGATGAAAACCCAGGACCTCAAATACGTGGAGATGAAGAGGGTGGCTGAAGCGAAGAAAATCGAGAGGCTCAAAGGCGAGCTGCACCTGCTGGACGCGGAGGGGAAGGTGAAGAACAAGCACACCTTCTTCGTGGACAGCAGGAAGGAAGGTACGCTGACCGAACGCAGCGAGCGAACGATCGTAGAGACGGGCGGGGAGACGCCTCGCTCTGTTCTGTCTGCGCTGAAGCGCGCTTTCACTTTGCCTCCCCCAGCCGCGGAGTTTGACGTGGCCAAGCGTCTCAACACGGTGCCGGAGCTGCTGCACCGAGTCTTCAACCGGCCCACTGTGGACATGCTGCAGACGGAGACCATCAAAGGAGCCACTCGCCCCACGGAGCTGAAGAAACTTGCAAAGCAGCGGAACCACCAGTACAAGATCCTCTCCCAGCGCATCGAGAGAGAGAAGAAGCTGTTCGTGATCTCTCAGAAGATCCAGACGCACAAGGACCTGGCGGACAAAACTGCGAAAGTGAAAGTGAAGAAGGAAACCGCCAATTCACCGGCGATTTACAGATTCCAGGCGAGGCGGAAGCGCTGAGAGCAGATTGGTAATTAATGCGAATGGATCGGCTCCTTCGCGCGTGATCGAAACACGGAGGTGCTGGGAGACGGGTTGTCTTGCTCTCTGATGGAGACGTGTGCTTTTCCAGACGGTTGCCAAAATGTGTGAGCTTTGCATTTCGGCAGCTGAAGGGGATTTTCTTGTTCTTTGTTTGAAGATCTGTGGAATCGTCCTGTTTAGGGATGggtgtacaaataaaatgattttgcagCTGACAAA

Function

GO: NA

KEGG:

id description
K14769 UTP11; U3 small nucleolar RNA-associated protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128775 lncRNA upstream 156347 4049938 ~ 4083586 (+) False G103078
TU128721 lncRNA upstream 646526 3592668 ~ 3593407 (+) True G103035
TU128630 lncRNA upstream 777430 3459862 ~ 3462503 (+) True G102959
TU128615 lncRNA upstream 782276 3434919 ~ 3457657 (+) True G102945
TU128613 lncRNA upstream 806786 3432815 ~ 3433147 (+) True G102944
TU128841 lncRNA downstream 37975 4288023 ~ 4290680 (+) True G103137
TU128854 lncRNA downstream 187829 4437877 ~ 4438136 (+) True G103150
TU128863 lncRNA downstream 286289 4536337 ~ 4594648 (+) False G103152
TU128866 lncRNA downstream 286289 4536337 ~ 4594648 (+) False G103152
TU128857 lncRNA downstream 342696 4592744 ~ 4596959 (+) True G103152
AMCG00010915 mRNA upstream 11005 4220702 ~ 4228928 (+) True AMCG00010915
AMCG00010912 mRNA upstream 63933 4171483 ~ 4176000 (+) True AMCG00010912
AMCG00010911 mRNA upstream 68925 4167178 ~ 4171008 (+) True AMCG00010911
AMCG00010913 mRNA upstream 89061 4138667 ~ 4150872 (+) True AMCG00010913
AMCG00010908 mRNA upstream 215931 4021061 ~ 4024002 (+) True AMCG00010908
AMCG00010918 mRNA downstream 320052 4570100 ~ 4572543 (+) True AMCG00010918
AMCG00010922 mRNA downstream 384424 4634472 ~ 4642403 (+) True AMCG00010922
AMCG00010933 mRNA downstream 829160 5079208 ~ 5080356 (+) True AMCG00010933
AMCG00010941 mRNA downstream 901788 5151836 ~ 5156195 (+) True AMCG00010941
AMCG00010936 mRNA downstream 909962 5160010 ~ 5160444 (+) True AMCG00010936
TU128774 other upstream 156347 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 659656 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 796399 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 811504 3426499 ~ 3428429 (+) False AMCG00010888
TU128580 other upstream 841427 3371053 ~ 3398506 (+) False G102921
TU128904 other downstream 388384 4638432 ~ 4642358 (+) False AMCG00010922
TU129373 other downstream 2391935 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 2667718 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 4298315 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 5280426 9530474 ~ 9533414 (+) False AMCG00011076

Expression Profile