RNA id: AMCG00010922


Basic Information

Item Value
RNA id AMCG00010922
length 3220
RNA type mRNA
GC content 0.47
exon number 4
gene id AMCG00010922
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4634472 ~ 4642403 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGGAGATCACACCGAGTAAACACCACATCCGGGCTCCGGCCCCAGCGCCGTGTTTTCCCCTGACGTCACCGGTGTGGCAACAGGCGTCTGCGCGAAACAAAAGCCGCTCAGCGATTGGCTGGCCGCCCGCAGAGCCGCTCTCCCATTGGCCGGCGCCGAGGCACTGCTTGGTACATGATCGGAGTCGGGCAGCCATTTTGTACCAAACAACTcggagagaggaagaaggagCAGCACTACAACTTCACTTCAGTGCTCAGCGCTTCCACTGGGGTTTATTCTTGTACACCGACCACCGCACCAGAGATATACCTAATCTGACACAACACCGCCAGACGAGGGGATCCGTGAACGGCCAGCCTGAGGAAGTCGTTCCGCGGCTTCTGCTACAGCCGAGCGCCGGGAGGATTGATGTTCGGCTCGGCGGCACGGCCCGACACCGCTGTACGGCACATGAGCGCCCCGAGTCCCGCAGGCCCCACAAGAGCAACCCGAAGCGGCTTCATTTCGACATCGAGGACCTGGAGCCCGGTGACAGCTGGTATAAGAGCAGGATGGGAGGAGGCGAGAGATACAACATTCCAGTTTCCCACCCGGAGCACGGGCTGCTGGTGAAGAACCACCATTTGAACGGCAGCAAGCAGCGCCACAAGGACCAGAACGCGCCGGTGGCGAGAGCCGGTCAGCCCAGGAAGGGCCTCCCCCGCGGGGCTGACGTGCGGCAGGCCGCACACGCAGAGAGGAACACTGTGCGCTTTGCCACGTACAACCAGAACTGGGACACCGCCATGGCCCACTTCAACACTCTGCTTAAGTCCCAGTGCAACCAGAACTACGCCGGGGCCAAGTTCAGCGAGCCGCCGTCACCAAGTGTTCTTCCAAAGCCGCCCAGCCACTGGGTCTCTCTTCCCCTAGCGCCTTGTGATCACCGTGAGGTCATGACCTTCCAGCTCAAGAGCCTCCTGAAGGTCCAGGCCTGAGGAGCTCGGTCAGTCGATGCGACTCTCCCATGTGTCCGCCTGCCAGTAACgctgcagagctgtgtgtggatgagtgtgtgtgtgtgggatgaGTGCGtgaggcgtgtgtgtgtgtgtgtacagataTTTGACGGTGTGGGTAAAAAAGTTCGGTGAGTCTCAGTCTCTGAGCGTTTTAAACTGTGTGGTTTAGTATTGCAGCGGCGCAGACTTACTGACTGGTCAGCACCGGGGAGAGCGCATTCTCATTAAGAACTGGATTTGCTAAGCTTTTGCTTGCCTTTTCTTTCCCAAACTGGCCATAGTTACTTAAAGATGGAGGGTAGGCTTCTCAAAATCTACCCCCCGcccaatctttttcttttttctttttttaattctcagatCAGTTTTTCAAACCTTGGATTTTATTCACTTAAatgtaaagagagaaaaaggaagatGGAAAGCATAGCAACTCTGTCCCATGAACTTGAACAGGgctcaaaattaatattttccttagATGGGTAGGTAACAGGAGCCACTTGACGATCACAACCAGCAGATGGTAGACGAGCTCGCTGTCCCGTGCACAGATGACACTTTAAACCTCCGAGCTGACGTCTCGAGAGCCTTGCCTGCTCCACGGACTCACTGCAactcttgtatttttatttttttaaggcgCTGTGCGCACTGCACTATAGGAGTTGCTTGGGTACAAGTCTGTAAGTGTTCTGCAATCACTTCCCCTTTTATCTAGGCCAATTTATATCAAAGTACACGCACTAGTGTGTTTACCAAAGCAATACACGTTTCCCTCTCAGACTCAGTTTGAAGTGCCATACAGACCAGTACTGAAATTAGAGTAAGTCTAGAGTTATTTAAGCCTCTGGGactttgtgtgttttatcttttgtatattttttccttttaaaaagctTAATCGCAGATAATTTGCAAGAGGACACGGTTGTAGAGATGAACTCTGTCAGCACGGTCTCTGCAGCATTGTTTGCTTTCAAGCATTTTGAAGGGAATGTATTTGTGTGAATGTTTAATATGGCACAGAGGACTAAAGCTGTTGGTTGTGAATTCAGCACTTACGTTTACATAAGACGGTCTCAAGGTGGCTTGCCAATATGCTCTAACTTCTCACTGCCTTGAACTTGTATTCTTCTTGCACTGGTATCGGATTATGTACAAATGCTAGCGTGCTCAATCACCCCTCAGAGACTGTTCTCTCATTGTACGAATCCCTCTAATAACGTTTTAATTTTGAGCCTTGTAAACCAGAGTTGGACACGTGTCTTTTCTTTGCAAGTTGGTAGCTATTGCACCCATGAAGTGCAAGCCTGTTTCTAAAGAGccatgtaaatgaaatgtaaaacttgtagcatatatatatattttgcagggATTTTGACCTGCAGCATAAGTATTTTTTAGTAAGAATGTAATGGTCATGCCAAGGACGTGACTAGAAAAAATGCTgaagatattttgtttatataaaaaagaaaaaaagaaaaaagaaaaagattgcGATGAGCACGTGAGCTGATGCCCCTGCACTGTGTAGCGTTCCCAGCGCTCTTGCACAtacgttttttaatttttaaaagatgttttgTATTGTGGTCAGTGCAAaagtttttttaagtaaaaatgatttttaactAACATTTTGCatgtatgaaaaaaacattttatcagCCCGAAAAATAGCACAAAAATCTTTCGCTCACCGTCGAGTTGATGAGGACCTATGCTGGAATTTTAACAATCTGTGGCCTTAGTGTGTCACTGGCTGTCGGGGCGGGTTAGTACACTCGATCCCAGCCGCCTTTTATAATGAGTTTTTCATATTGTAGTGTTTTGTAGTTGtagcaattaatttaattgttcatCTTTTGGTTATTAGGGTAGAATTGTAATTGTCTGGTGAGTTCAGCCATCACAACACTGAAGtacttatgttttttgttttttttgtacttgttcTCTTCATACATGCGAAATAGCgttgaaaatgtaaacaattgGCTGCAAATTAGAATCCCCAACTATTGTCACATCGATGTAAACCTGGGTCCCACAACCAAATTCGTTTCAAAATCTAAACCTCAATTGAAATATTGCACTATCGATTTAAATTGGCTgctaaaatcaataaaatcccTTTCCTTGCCCCCCTAATACTTGTCTGGTGTTTCATTGTGCTTGATGTGATATTTCCAGTCCATTGATTTGG

Function

GO: NA

KEGG:

id description
K18751 PNRC2; proline-rich nuclear receptor coactivator 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128860 lncRNA upstream 14816 4592744 ~ 4619656 (+) False G103152
TU128857 lncRNA upstream 37513 4592744 ~ 4596959 (+) True G103152
TU128863 lncRNA upstream 39824 4536337 ~ 4594648 (+) False G103152
TU128866 lncRNA upstream 39824 4536337 ~ 4594648 (+) False G103152
TU128854 lncRNA upstream 196336 4437877 ~ 4438136 (+) True G103150
TU128991 lncRNA downstream 491824 5134227 ~ 5140721 (+) True G103258
TU128992 lncRNA downstream 491824 5134227 ~ 5140721 (+) False G103258
TU129062 lncRNA downstream 711366 5353769 ~ 5355664 (+) True G103316
TU129094 lncRNA downstream 813955 5456358 ~ 5460573 (+) True G103333
TU129117 lncRNA downstream 907655 5550058 ~ 5613434 (+) True G103348
AMCG00010918 mRNA upstream 61929 4570100 ~ 4572543 (+) True AMCG00010918
AMCG00010916 mRNA upstream 384424 4239933 ~ 4250048 (+) True AMCG00010916
AMCG00010915 mRNA upstream 405544 4220702 ~ 4228928 (+) True AMCG00010915
AMCG00010912 mRNA upstream 458472 4171483 ~ 4176000 (+) True AMCG00010912
AMCG00010911 mRNA upstream 463464 4167178 ~ 4171008 (+) True AMCG00010911
AMCG00010933 mRNA downstream 436805 5079208 ~ 5080356 (+) True AMCG00010933
AMCG00010941 mRNA downstream 509433 5151836 ~ 5156195 (+) True AMCG00010941
AMCG00010936 mRNA downstream 517607 5160010 ~ 5160444 (+) True AMCG00010936
AMCG00010935 mRNA downstream 524191 5166594 ~ 5169607 (+) True AMCG00010935
AMCG00010943 mRNA downstream 612692 5255095 ~ 5274132 (+) True AMCG00010943
TU128774 other upstream 550886 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 1054195 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 1190938 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 1206043 3426499 ~ 3428429 (+) False AMCG00010888
TU128580 other upstream 1235966 3371053 ~ 3398506 (+) False G102921
TU129373 other downstream 1999580 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 2275363 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 3905960 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 4888071 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 6176285 10818688 ~ 10819423 (+) True G104273

Expression Profile