RNA id: AMCG00010925


Basic Information

Item Value
RNA id AMCG00010925
length 1633
RNA type mRNA
GC content 0.53
exon number 6
gene id AMCG00010925
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4642652 ~ 4650406 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTTATAGTGTCGTTTTACAGTAAGCATCTAGAATTCGCATTTTGACAAGAGTGGCATTAACATCCGTATGTCCCGAACGGCGATCCGTACATATAGACAAACCTTGGCCGCATAAAAAGCACTGACAGGAGTCTTCTGCAGGGGATTGGTCGCATAACAAATGAGTGACAAGCCGTCATTGCGAAGCGATTGGCTGCCTGCAACACTGACCCCGCCCACATTCCAACGTCTGCGGCTCTGCAGCGGAAATCACGTGTCTCCGCTGCCCTTGCGCTACGTCTTTACCGCGCCTGCGCAGTGCGCTCCtcgctgtgtttttttttaactgcgaTTGTTTCGGCGCCGGCCTCTCTCGCTCCGATAGCGCTCGTTGGGGAGACTTTTGTGGCCATGGCCAGGTACCTGCGGCCTCCAAACACGTCTCTGTTCATAAGGAATATCTCCGACGAATCCAGGCCTGAGGATTTACGTCGTGAGTTTGGTCGTTATGGGCCAATAGTAGATGTCTACATTCCAGTTGACTTCTATACTCGCCGGTCAAGAGGATTTGCATACATTATGTTTGAAGATGTGCGCGATGCAGAAGACGCTCTGCACAATCTGGACAGGAAGTGGGTGTGCGGCCGCCAGATCGAGATCCAGTTTGCGCAGGGCGACCGAAAAACGCCCAATCAGATGAAGATGAAAGAGCGCAGATCCCCGCGCAGCTTCTCCCGCTATGACGACTACGACCGGGATGGCCGGCGCAGGCGCTCCAGGAGCAGGAGCTACGAGAGGAGACGCTCCCGGAGCCACTCCTACGAGAGGCGGCCGCGGAGGTCAGAGAGCCCCGGAGACTCCCACGGCCGATCGTACGGGAAACACAGACGAAGCAAAAGCCATGAGAATGAGAGacCCAGATCGAAGGCTAAGAAGGAGGCCAAGGTCAAATCCCGGTCCAGGTCCAAGTCCCCGACCCCGCCCGTGGAGGACTTCCAGCCCGCGGCCAACTCCCGCTCCCGCTCCGAGTCCCAGAAAGATTCCCGCTTGAGGTCGCCCTCCCGCTCCCGCTCCAGGTCCCTGTCCAGATCGCGCTCCAGGTCCCGGTCCTGGGCGGGTCGCAAGTCCGGCGGCCATTAGACGGATcttaatccccccccccaccccctgacCCATTTGCTTTCGTTTTGACGTATCGGTCACGGCTTcggttttaatttttgtttcttcccccccccaccaaatgTGTCACGATGTCTTGAATACGCATCGGACCGGAGGAGACCCGCAGTATTTTTGTTCCACACGCCggtctgatgtttttttgtttcggGTTTAAAGCGAATGCTGCTCTAAAGATGGGCCCGACCAGCACCGCGATCCGGGGAAGTATTAATAAAGTGAGCAACGTTTCCGGGAACAAACCTCTGAGGAGCGGTTAGCCGGAGCTGGAATCTAAACTGTACGGTTGTTTTTTAATGGGCCACCTTTTATGCTAACCTGTATGATGTTTGGTTCCTTGTGTGCAAAcgtaaaatatgtttgtatttaacagACTATTCCCTAAAGaggctacatttaaaagtattttacagctGTCGACACTtaaggaacttttttttttttgtcttttgcttcGTGTAAACACGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128853 lncRNA downstream 218841 4425354 ~ 4425572 (-) True G103149
TU128794 lncRNA downstream 491665 4152518 ~ 4152748 (-) True G103095
TU128793 lncRNA downstream 493496 4150499 ~ 4150917 (-) True G103094
TU128784 lncRNA downstream 504776 4138620 ~ 4139637 (-) True G103087
TU128741 lncRNA downstream 859782 3784257 ~ 3784631 (-) True G103050
TU128989 lncRNA upstream 465309 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA upstream 465309 5115715 ~ 5124287 (-) False AMCG00010937
TU129052 lncRNA upstream 633924 5284330 ~ 5291900 (-) True AMCG00010946
TU129054 lncRNA upstream 681326 5331732 ~ 5334257 (-) True G103309
TU129082 lncRNA upstream 709569 5359975 ~ 5378226 (-) True G103329
AMCG00010923 mRNA downstream 25891 4617431 ~ 4618522 (-) True AMCG00010923
AMCG00010924 mRNA downstream 39719 4592902 ~ 4604694 (-) True AMCG00010924
AMCG00010920 mRNA downstream 55008 4580851 ~ 4589405 (-) True AMCG00010920
AMCG00010921 mRNA downstream 68862 4574316 ~ 4575551 (-) True AMCG00010921
AMCG00010919 mRNA downstream 74759 4557553 ~ 4569654 (-) True AMCG00010919
AMCG00010926 mRNA upstream 3043 4653449 ~ 4658316 (-) True AMCG00010926
AMCG00010928 mRNA upstream 11222 4661628 ~ 4691552 (-) True AMCG00010928
AMCG00010929 mRNA upstream 45613 4696019 ~ 4702450 (-) True AMCG00010929
AMCG00010927 mRNA upstream 73274 4723680 ~ 4736732 (-) True AMCG00010927
AMCG00010930 mRNA upstream 166327 4816733 ~ 4839059 (-) True AMCG00010930
TU128814 other downstream 458439 4169793 ~ 4185974 (-) True G103112
TU128662 other downstream 1225237 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 1225237 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 1316854 3325858 ~ 3327559 (-) False AMCG00010895
TU128533 other downstream 1461794 3179970 ~ 3182619 (-) True G102902
TU128994 other upstream 483804 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 1054364 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 3321218 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 4169145 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 4204499 8854905 ~ 8863666 (-) False AMCG00011051

Expression Profile