RNA id: AMCG00010926


Basic Information

Item Value
RNA id AMCG00010926
length 824
RNA type mRNA
GC content 0.51
exon number 4
gene id AMCG00010926
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4653449 ~ 4658316 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCCCGAGCTCGCCCCGGACTCTCTCCCTCACACGAGAGCCGCTCTCAGAGTCGCATCCCTCCACGGCGTCACATGCCAGGGAGGGTTCATCTGCACCGAGGTGATGCAAGTGAACTTGAGGTTatttaaataagttgtttaGAAATCGctttagcacacacacacacacacacacacacacacacacactctctcacaaaGACAATTGGTTACTGATTAGGTGAAAGGGAGAGATTCGTGCAACGCTGATATAAATACCCGGGTGCGCAACATCCTTGTGCTTTCACACGGCTTTGAGTCGCCCCACAGACACCCTCCCGTAGGAGCAGAGGCGACAGATGGCAGGCATGGCGTTCAACGGGACATGGCAGGTCTACGCTCAGGAGAACTACGAGGAGTTCCTGAGAGCGATATCGTTACCGGACGAGGTTATCAAGATGGCAAAGGACATCAAGCCCATCACCGAGATCAAGCAAGATGGAGACCATTTCGTCATCACATCCAAGACGCCGCGCCAGTCCGTGACCAATACCTTCACCATCGGGAAGGAGGCCGAGATCACCACCATGGCGGGCAAGAAGCTCAAGTGCACCGTCAGGATGGAGGGGGGGAAGATGATTTGCCAGTCAGAGAAATTCTCCCACATTCAAGAGATCCAGGGGGATGAGATGGTGGAGAATTTAACTGTTGGATCTGCCACCCTGACCCGAAGAAGTCGGAAAGTCTGACATCTCCAACGCACAAGACCTTACACCGAATGCTGGGAGTATAGGGTGACTTCataggcaaataaataaaacatattaaatgatACCAATAAAA

Function

GO: NA

KEGG:

id description
ko00350 Tyrosine metabolism
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128853 lncRNA downstream 227877 4425354 ~ 4425572 (-) True G103149
TU128794 lncRNA downstream 500701 4152518 ~ 4152748 (-) True G103095
TU128793 lncRNA downstream 502532 4150499 ~ 4150917 (-) True G103094
TU128784 lncRNA downstream 513812 4138620 ~ 4139637 (-) True G103087
TU128741 lncRNA downstream 868818 3784257 ~ 3784631 (-) True G103050
TU128989 lncRNA upstream 457399 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA upstream 457399 5115715 ~ 5124287 (-) False AMCG00010937
TU129052 lncRNA upstream 626014 5284330 ~ 5291900 (-) True AMCG00010946
TU129054 lncRNA upstream 673416 5331732 ~ 5334257 (-) True G103309
TU129082 lncRNA upstream 701659 5359975 ~ 5378226 (-) True G103329
AMCG00010925 mRNA downstream 3043 4644413 ~ 4650406 (-) False AMCG00010925
AMCG00010923 mRNA downstream 34927 4617431 ~ 4618522 (-) True AMCG00010923
AMCG00010924 mRNA downstream 48755 4592902 ~ 4604694 (-) True AMCG00010924
AMCG00010920 mRNA downstream 64044 4580851 ~ 4589405 (-) True AMCG00010920
AMCG00010921 mRNA downstream 77898 4574316 ~ 4575551 (-) True AMCG00010921
AMCG00010928 mRNA upstream 3312 4661628 ~ 4691552 (-) True AMCG00010928
AMCG00010929 mRNA upstream 37703 4696019 ~ 4702450 (-) True AMCG00010929
AMCG00010927 mRNA upstream 65364 4723680 ~ 4736732 (-) True AMCG00010927
AMCG00010930 mRNA upstream 158417 4816733 ~ 4839059 (-) True AMCG00010930
AMCG00010932 mRNA upstream 236603 4894919 ~ 4897557 (-) True AMCG00010932
TU128916 other downstream 3343 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 467475 4169793 ~ 4185974 (-) True G103112
TU128662 other downstream 1234273 3320813 ~ 3419176 (-) False G102990
TU128666 other downstream 1234273 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 1325890 3325858 ~ 3327559 (-) False AMCG00010895
TU128994 other upstream 475894 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 1046454 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 3313308 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 4161235 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 4196589 8854905 ~ 8863666 (-) False AMCG00011051

Expression Profile