RNA id: AMCG00010927


Basic Information

Item Value
RNA id AMCG00010927
length 4120
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00010927
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4723680 ~ 4736732 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAGGAACTTGCCATTAAACGGTAAGTGTGCCAAAGTTCAGCCACAATAGCTGCCACAATGCATTCAGTACGGCCAAGACATGTCCCAGGTGTGCAGGGCTGAGCTGCGCAAATGAAATCTTTTACAGGGAAAGTCAGGAGGGAACGCTCGGAGCGATACAATCGTAATTCTTCTGACAGGAatacatctttttcttttttgtattattgtgtttgattgttttctgtggCTTGAGGGCTTTCCACTGCAGTGCCAGTCTTTTCCCAGTCTCCTCCGTGGGCCCTCTGGACCGTACCTGGCTCGTGGCTATGTGGCGTTTAAAGGGGGTTGCTCTGGTTCTGTGTTTGCTTGGTCTTCCTTCAACTGAGGGCTCCCCTGGGAAACTCGTGTACTTCAAATCCAAAAACCTCAGGAGCGTTCTTCACTGGGACAGAGCGGACGGCGCAGGGAAAGTCTTATACAGTGTGCAGTACAATGTATATGGATCTCCTATGCATGACCATACAGAATGCCAGAACATCACCGTCTTGTTTTGTGACCTCACGAAGGAAATGAATGACAACGAATACTACTATGCCAAAGTGACTGCTGGGGGAAAGGAGCTGAATACGTCCTCGAGGTTCAATCCGTTCCTAGAGACTGTCCTGGGAGCACCGGCGCTGCAAGTGTCTGCCACGGTCAACTCAATAAATATCACCGTGATTACCCCAACTGGCCCAGACAATAAGACCTCCCTGGAAGACATTTACGGAAACCTTAAATATGAAGTCAAAATCAACGACACCAAAGTGCCAAGACTGAAGGACAACTTTAAATCGATTGAGATTGTTTCACTCAAGCCTGACATGAAGTACTGCGGATCAGTGGTGTACATGCGGGAAAGCTACCAACACACAAGCGACCCTTCCGCATTCTGCATCAAGACCCAGAAAGCCCACCTGGGTAAATGTCGAGGCGAGATCAGGAGTGGAGGCAAGAGAAAGGACCTGTGGGCTAATTCAGAGCAGGAGAACATCCGTTCAGCAGCACCAATCAGCTCCCAGAAATCCCCCCAGGAGTGCGTCTGTGTCCACAAACTGGAAGTCCATCAAACCAAGCCCTGTCTCTTCACCATCTCCAATGTGGAAATGAAACCTCATGCCCGCTCCGGTTCCACCCTGCCCGACTCATCGACACCGTACACTTGTCAGGCCCACCCGGCGTCAACAGCCCCCGACAGCACCTGCACCTCCAGCACCGTTTACGGCCTGGTGTTGGACTTGCCGACAAACGCTGACACCGAGGAGAGAGGCTACCGGCTGGACGTGCTGCGGTGCATCGATCCTCCTGGGGGGCCAGAGCAGAAACGCTGCAACGACACAGACGAGGAGACGAGGGCCGACGTGGTGGGACAGCCGTTTACCTACGACCCCCGGCACGAGCCTCCACCTCCCGCTGACGGCTGCGCGGTTCAGCTCAGCCTCCAGATGATTCAGATAGACAGCCAACTGGAAATCCACAGCCTACTTCCTTTCCTTCAGCCCCAGCCAGACAGCCCGGACTGTGGGGAGGAAACACCTCTGCTGTTGGACATCACAATTGAGGGCGAGGCGAAGTCAGACACTGGAGAGCAGCCCAGGACAAAATACCTGCCCAGCCAGTTCCCTTGTCCCCCCGTTTATTTCCAGAGACCATCTGGTTACCGACCTTGTTTCCAAATTCCAAGCACAGGGTCACCGACGCAGGACGTTGTGTTTGTTCCCAGCGGGAGTTACAGGCCCAACCAGCTTTTCACCTCACTGGAAAGACTGCAAGCAGATAACTCTGGCTTCCTGAAGGACTGGGGCCTACAAATTCCAGAAATCATTGAATGATTCTAGTTCTGCTTTGGCGTTCCAGCCTAAGCCTTTTTTACACGTATGCTGAAGTTGCAACATAGAGAGAGTATGCCAAACCTCTGTAATTCCCTGGCTGCATTTCCAAATAGGGCTTATGAGAGCTGTGAAAaatgcaacagcagcagcacactgCCATGGCACAACGTGGGCAGTCCTGAGAGAGAACGAAAAGGCGGGGataaaacaccaagcacaaaaggTGCCGTGTCGTGCAGGACTCGGTGTGCAGAGAGCTGGTATTTACACCACGATGTTAATGACACTGTCTGTGGAGGATGGTCATTGTAAAAATGGCAGAACACTGTGCGTGCCAATATGAAGTAAAAATGATGTTTGTgatacaacacatttttgtacatAAGCTTGAATTGTTTTGTGATTGCCGTGCGCTGGCTGCACTGTTCAATAAGAAGTGATATTGTATGCTGTAAGTGAGAGAGAGTGGCTGTTTACAtacctgtcagtgtgtgtgccaagatgaaggaacataaaatataaactcaAGAAGTGCTGAAGTCTATACACACCATGaatgtataatattaaatgcagagaaatatatatagtgacaaGAGTATGATATATGtaccaaaaaaacaattgaCACTATTAAAAAAGTGACTTATATCTGCAATCTCGCACTAGTTCATTCACGTTGGAGCAACTATTGTATCAAAGACTCAAAATGCATCACCAGGAAGTGCTCCAGAAAAGTATTAGATGGGACTTCCCCTGGCCAACAGACGATACTTCCATAGTTTAAATAGAAATTTGATCTACCTCAGCTACCACAGACGGCTGGCTCCATTGTAAGCTAATACAGGGATCTGGATAGTTTATATCATGTTAcctttatttgaaatacatttgtttatacagAGCAGCGAAACTAAGATAGTATGTCACATCACATGGATCTTACATAACCCTACATAAAATCACAATTAccttttaaaaagtacagaatTGCGATTCAGTCATGCTAAACTGCTGTATCTTGAACTGTACTGACTTTCTCTTTATTACACATTGAATGTAATACtgtattctatatttttatatactatGTTAGTATTTCTGTCTGTAGTACCTTGCTGAATGTGAATGTTCTTGGACAAAGGCAAATACATGCataatcattgtttttataatagttGAATTGGAGAAACCCTTCAGAAACTCGACTGTGCTGGAAGCATGAGTAAGCAGGTGCCACCCTTCAGAGATTTATCTTGGAAAGTGGTTTATAGCTGAGGAACAAGAGGGTGGGGATTATGGCGCAGATAAAAGTGGCAAAGTACACGCACCTGAGAAATAGCAGGTTGCTAAGTGAACACCGAGCTTCCGTTCTGTGCTGTGGCTCTTGAGTTTGGTCTTTATTTAGGTTTGTTTTAGTGATTGTAAAAAGGTCTTGGGCTCACAGTGAGAAGCCTAGACTTCAGATCAAGGACAGGAGTGACTGGAGAGACATCCCGGTATAAATGCCCTGAAACTGAACATGTGGTTTCCTGTAAAAGAAAGCCTAAATCAGATAACTTTAATTAAACCCAATCAGTTTCTTTATCGTCCGTGGGCTGCTCGAGTGACAGTGTACAGCACCCTATAGGCAGCTGTCAGACAAGTGCCGTTCACAGATTCCACGGTAAGGACATAGTCCTGCCCTCTTTGGGTAAGATCCTCTTTCTCAGATTGTTTTAATACCCAGCAGTTCAGTAAAGACGCTTCTTCGCTGGGTCCCACATTAGGAGCTCATTTGAAAGTTAAGTGGTTGTCCCTTTGTTCAGTGGTTCAGACCACATTTGCAGCTtgtattctgtttctttattatgaATTTTTAAAGAATTGTCCTAATTCCAAGTGGGATGCGTTCCAAAACTTCTAATGCTCTTAAGTATTTCTGACTGTGAAGGAACAAATAGAGATATCAACCCCCATGAATCAACCCTTCTAATCCcttgcccctaagtggtggaacgaccttcccattgaagtcaaaacagcagagtccctgacctccttctggcgattactcaagacacatcttttcagactctactcgtattgtttattttgatttcccctatgctcccttcccttggcccttgactgtgacctaacaccttgtctgcactcatcagcttttacaatctaggatgtaagacctcatatattgtttactgtgtaTCTCATACCcacttgtgtaaattgcatctgctaagaaataaataataatcatgaat

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128853 lncRNA downstream 298108 4425354 ~ 4425572 (-) True G103149
TU128794 lncRNA downstream 570932 4152518 ~ 4152748 (-) True G103095
TU128793 lncRNA downstream 572763 4150499 ~ 4150917 (-) True G103094
TU128784 lncRNA downstream 584043 4138620 ~ 4139637 (-) True G103087
TU128741 lncRNA downstream 939049 3784257 ~ 3784631 (-) True G103050
TU128989 lncRNA upstream 378983 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA upstream 378983 5115715 ~ 5124287 (-) False AMCG00010937
TU129052 lncRNA upstream 547598 5284330 ~ 5291900 (-) True AMCG00010946
TU129054 lncRNA upstream 595000 5331732 ~ 5334257 (-) True G103309
TU129082 lncRNA upstream 623243 5359975 ~ 5378226 (-) True G103329
AMCG00010929 mRNA downstream 21230 4696019 ~ 4702450 (-) True AMCG00010929
AMCG00010928 mRNA downstream 32128 4661628 ~ 4691552 (-) True AMCG00010928
AMCG00010926 mRNA downstream 65364 4653449 ~ 4658316 (-) True AMCG00010926
AMCG00010925 mRNA downstream 73274 4644413 ~ 4650406 (-) False AMCG00010925
AMCG00010923 mRNA downstream 105158 4617431 ~ 4618522 (-) True AMCG00010923
AMCG00010930 mRNA upstream 80001 4816733 ~ 4839059 (-) True AMCG00010930
AMCG00010932 mRNA upstream 158187 4894919 ~ 4897557 (-) True AMCG00010932
AMCG00010931 mRNA upstream 242204 4978936 ~ 4981453 (-) True AMCG00010931
AMCG00010934 mRNA upstream 266154 5002886 ~ 5030530 (-) True AMCG00010934
AMCG00010940 mRNA upstream 359859 5096591 ~ 5103397 (-) True AMCG00010940
TU128916 other downstream 73574 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 537706 4169793 ~ 4185974 (-) True G103112
TU128662 other downstream 1304504 3320813 ~ 3419176 (-) False G102990
TU128994 other upstream 397478 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 968038 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 3234892 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 4082819 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 4118173 8854905 ~ 8863666 (-) False AMCG00011051

Expression Profile