RNA id: AMCG00010928


Basic Information

Item Value
RNA id AMCG00010928
length 4630
RNA type mRNA
GC content 0.51
exon number 28
gene id AMCG00010928
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4661628 ~ 4691552 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGCAAACGCCAATACTGGGGTTCGTGAAAGACTCATCTGGTAAAAAAGACCTCCACCCCAGGTCACTCCGGAGTCCAGGTCAGATGCTACCAGAAGAAGAGGGTTTAAAGACCCTCCTGTTCAGCCCTTCATTCTCCTCCCCAGCTCCGGCCTTGGTGAAGGAAGCCGACTTCCAGACAACCTTCCCGCCATCCTTCGCCAAAGAAGGGGAATCGCTCTCCTTATGCTGCCTCTTTTCTTCAACCTTGCTCCCATACCAGCAAGGGGTCATCTGGCTCAAAGACGGGCTTCCAGTGACTGAATCCAAAGGAGTGGAAATCCTGAACACCTCCCTCTCATCCACACTGTCCGTGAACAAGGTGTACAAGGAGCACGAGGGAGTCTATACCGTCCGTCTGCCCAGTATGACTGGAGCCAAGGAGCACAGCGCATACGTCTACGTGAAAGACGCCTCGGCAGCTGTGCCAGGGGCGCCCGGGGCCCCTCTGGACGTGCGGTGCAGTGACGTGCAGAAGGATTATGTCTTTGTCACCTGGAAGCCGCCCAGCGCAGATggcagcagtgctgtgctggGCTACTACGTCGACAGGTGTGACATTGGCACGGGGGAGTGGGTGCAGTGCAATGAAACCCCTCAGCGGCTGTGCCACTACCCAGTCCAGGGCCTGCAGGAGAACCGGATCTACCAGTTCAGGGTGCGAGCGGTGAACAGGTCCGGAGTGGGCCGCCCCTCCAAGAGCAGCGCCGCCGTGACCACGTGCGACCCGGCCAAGGCCAGCAGGGTCATGGGTGAGGTTCGTGTTCCTCTGCCGCCCACGGACGTCTGTGCCAGCATGGTCACCGACAGCTACATCACGCTGAGCTGGACTGAGCCGGACCCCAGAGGGAGGGAGCCGCTCAACTACTATGTGGAAAAGTCAATAGCAGGCAGCAACAGCTGGCAGATGGCCAACTTGGATACGTCTGTTAATTCCCTGAGATTCCCAGAGTTCGCCCTCcagaagggaaagtcctacgtCTTCCGCGTCCGCTCCGTGAATAAGTATGGAGTGAGCGACCCATCGGAGCCCAGCGAACCCGTCTCTCTGAGAGAGAAAATTGCACCGCCGCCCCCTCCTCACGGTGTCCTGGCCAGCCGAGACACTAACACTTCGGTGGTGCTGCAGTGGGAGCCACCAAAACAGGCCCAGGAAGTCATTGGCTACTACATCTACAGCTGTGAGGTTGGGACTGACAACTGGGTCACAGTGAACAACAAGCCGGCCACCGGCACCAGGTTTACAGTTCATGGCCTGACGCCTAATAAGAAGTATGTGTTCAGGGTGAAATCGGTGAGCGCAGCAGGCGTCAGCGACTACTCTGAGGAGTCGACACCCCTGACCGTCAAAGCAGCGATCTCCCTTCCTTCCCCTCCCTCCGGCGTTGCTCTCCTGAACTGCGGCAGCAATGATATGGTGATCGGATGGAGGCTGCCGGCCAACAACGGTGGCGATGCTGTCCGGGGCTACTTCGTAGACCAGATGGACGTCTCGGAGGGCATTTGGCACGAAGTGAATGTGAAACCCATCGCGAAAAGGATCTTCCAGGTTAGCCACCTGCAAGAAGGATGCCCCTACGACGTGGTGCCCAGAGAGGTGCGCAGGAACTCGCTGGTCTTGCTCTGGGAGAAGCCACTGTACTGCGGCCACAGCCCAGTCACCAGCTACCTCGTGGAGATGTGCAGCGGGGAGGGTGCGGACAACTGGGAAGCACTGATGGAGGAGCCCACCGACAAGACGTACTTTAAGGTGTCTGGTCTCGAGGCGGGCGAGATTTACAAATTTCGAGTGTCTGCGGTGAACTCTGCGGGGGTCGGACAGCCCTCCCTGCCATCAGAGGAGATCAGAGCAGAAGCAAAACCAGgtGTGAAAGATATTGAAATCGGGGTTGATGAGGATGGATTCATATTCCTGGCCTTCGAAACGCCGGAGATGAACGACTCGAGCCAGTTCGTCTGGACCAAGAACTACAGGGATGCCATCGACAGCGGGAGAGCCAGGATTGAATCCACAGATAACAAATCAAAGCTGACCTTCACTAATCCCTCGGAGCAAGACTTGGGGCTGTACACCGTGGAGATCAGCGATATTAACGACATCTCCTCCAGCATCACTTTCACAGATAAAGACCTGGAGAGACTTTTGGACCTTAGCTGGCAATCAGGCTGGACCGTGGAGGTGTTTGAGAGAGGGGACGTGCGTCTCTCGCTGCGAGTGGAACCGCTGAGCCCCGCCGCAGAGCTGAAACTGATCTTCAACGATAAGCAGATCACAAGCACCCCGAATCGCAAGGTCAATTTCGACAGAGCCAGCGGCCTGGTGGAGGTGTTGATCGACCCGTTTTCGGAGGCGGACGAGGGCTCTTACACGGCCCAGCTGAGAGATGGAAGAGCCAAGAATCAATTCACGCTGGTCCTGGTGGATGAGAAATTCAGGCAGACGCTGGCCCAGTCGCGGAGCAACAAGCGGGACTGGACGAGAAAGCAAGGGCCATATTTCCTGGAGTTCATGTCCTGGAAAGTGACCGAGGACTGTGAAGTTGTCTTCTCATGCAAGGCCACCAACACGAAGAAGGAAACCAGTCTGAAGTGGTCCAAGGATGGAAGAGAGATCCCCAAAATcgattataatcctcaaactggAATCAGTTCCCTAACCATGCCACAGATCATGAAGAAAGACGTGGGCATGTATAAAGCTGTGTTGTCTGATGACCGAGGCGAGGACGTCAGTGTCATTGAATTACTGGATGAAGCCCTGTCGGCGAGTCCGCTGGCCGTCCAGAGCACCGCGGAAGGTTTTAAGCTGTACTGCTCTTTGAAGTACTTTCTGGATTACATGAAAACCAGCTGGTATTTCAAAGAGAAGAGAATGGATAGTGGGGCGAGGACTAGGTCCGGGAGCAGCTCGCAGAAGGTCTGGATAGAGATCTTGAACCCCACGGAGTCGGACAAGGGCAAATACACACTGGAGATGTTTGATGGCAGAGAGACCCACAAGAGGACACTGGACCTCTCAGGCCAAGCATTTGCCGATGCCATGACAGAATACCAAAGACTGAAGCAAGCGGCTCTTGCTGAAAAGAACCGAGCTAAGGTGACCAAGGGCCTGCCGGATGTGGTGGCGATTATGGAAGACAAGTCGCTGTGTCTCACCTGCTTCCTGGCGGGGGACCCGGCCCCGGAGGTGTTCTGGCTGAAGAACGACAGAGAGATCGTCTCCGGGGCCCAGTACAAGATCACGGTGGAGCCCGGCTGCAGCTCCATCATCATCAACTGCGTGTCGGCCGCGGACTCGGGCAAATACAGCATCTTCGTGAGGAACAAGTACGGCTCGGAGACGGTCGACGTCACCGTCAGCGTGTACAAGCACGGGGAGATGCCCGCGGAGGGGGCCGTGGAGATGTAGGAGGTGGTTTATTGGGGGGAGGTTGTtggtgttttgatttttttttttgcccccgAAGGAACCTAAACctagggctgggattaaatccaAATTTGTACCCACCCAGTCAATAGAAAACTATGAGCTGCGGCTGCTTTACTGTTATTCTACTCGAAATCTAACCTCTGTCAAGttcaggtttgtagtttgtctGAGgcggtgggtcaatgttttgatgtagCCCAGCCCTAGGACTCCTTTTGTGTGGTTggttgatgtgtttttatttgcttaagTGGCCATTTTAATTCATAATGCATGTGGCACTACTAGTGACATCAGAATACAGGTTTATGAGACTTCCTTCTCCTGTCCTAACCCTTCGATTCTCCAGCTGAGCTCTGGGTTACTTCATTGATCCAtgggttattatttatttcttattatcataactgttcaaaacaaataagtaaccattaaaggtagggtatcctattttaatttgaaaattaaacaaagttaTAATTCAGATTTAAATCCAGAATTAAGGTCACCAGTTTTATTGGCATTGCAGTTGAGAAAGAAAAGTCTGGTTTTATAGGTTTTTATAGGTATTCATTCCTTAAAGGTTAAGTGCAGATCATCATTAGTAAAAACCATGAGCATTACTTTATGGAAAACTGATTTTACTGATTTCCCCAcagcataaatatataaacaaagaaacaaagaaatggTAGATGAAGTTAATAtctctcatttttctttttaggaCATAATATAAACTAATACTAAATAAGCCACACCACTTAATACGTCTCGGAGAATAATATGCAAGTTAAAGATTAATACTCTTGGACAGTTGAGAAGACCTCATCCGGAGTGATTTCTCTTCGCCTTTAATAGCAAATTACATGGCACTTTAACAGCATTAGTCTCTTTGTGTTTGGAAACGCACCCCTGTTCAGAATTCAATTAGACTCTGTGCTATCTAATATTAAAGCTAAATTACTCTGATGTGGTTTAAAACCAGTTGCGATGCACTCAGGACAGATTAGATTAAACACAAAGACGTGCCTCGCTTGCTTCTTTTGATTGATATAATTTATGCACTCTTTCAGGTGTTATAGGCAGTTAACTTCATTGTAAATCAAGCCGCTGTTCATCGACGACTTTGAAAATGTCCCCGTTTTGTTGTCTG

Function

GO: NA

KEGG:

id description
K24495 MYOM; myomesin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128853 lncRNA downstream 236056 4425354 ~ 4425572 (-) True G103149
TU128794 lncRNA downstream 508880 4152518 ~ 4152748 (-) True G103095
TU128793 lncRNA downstream 510711 4150499 ~ 4150917 (-) True G103094
TU128784 lncRNA downstream 521991 4138620 ~ 4139637 (-) True G103087
TU128741 lncRNA downstream 876997 3784257 ~ 3784631 (-) True G103050
TU128989 lncRNA upstream 424163 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA upstream 424163 5115715 ~ 5124287 (-) False AMCG00010937
TU129052 lncRNA upstream 592778 5284330 ~ 5291900 (-) True AMCG00010946
TU129054 lncRNA upstream 640180 5331732 ~ 5334257 (-) True G103309
TU129082 lncRNA upstream 668423 5359975 ~ 5378226 (-) True G103329
AMCG00010926 mRNA downstream 3312 4653449 ~ 4658316 (-) True AMCG00010926
AMCG00010925 mRNA downstream 11222 4644413 ~ 4650406 (-) False AMCG00010925
AMCG00010923 mRNA downstream 43106 4617431 ~ 4618522 (-) True AMCG00010923
AMCG00010924 mRNA downstream 56934 4592902 ~ 4604694 (-) True AMCG00010924
AMCG00010920 mRNA downstream 72223 4580851 ~ 4589405 (-) True AMCG00010920
AMCG00010929 mRNA upstream 4467 4696019 ~ 4702450 (-) True AMCG00010929
AMCG00010927 mRNA upstream 32128 4723680 ~ 4736732 (-) True AMCG00010927
AMCG00010930 mRNA upstream 125181 4816733 ~ 4839059 (-) True AMCG00010930
AMCG00010932 mRNA upstream 203367 4894919 ~ 4897557 (-) True AMCG00010932
AMCG00010931 mRNA upstream 287384 4978936 ~ 4981453 (-) True AMCG00010931
TU128916 other downstream 11522 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 475654 4169793 ~ 4185974 (-) True G103112
TU128662 other downstream 1242452 3320813 ~ 3419176 (-) False G102990
TU128994 other upstream 442658 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 1013218 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 3280072 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 4127999 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 4163353 8854905 ~ 8863666 (-) False AMCG00011051

Expression Profile