RNA id: AMCG00010930


Basic Information

Item Value
RNA id AMCG00010930
length 1092
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00010930
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 4816733 ~ 4839059 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACAGAGGTGTACAGGAAGAAGGTGGCAGAGCTGGGCGAGAAGCTCTTGCCTGCGTTCAACACTCCCACGGGCATCCCCAGAGGCGTCATCAATTTGGGCAGtgGGACCAGTTGGAGTTGGGGCTGGGCGTCAGCAGGCAGTAGTATTTTAGCCGAGTTTGGCACCTTACACCTGGAGTTCGTCCACCTGACTGAAATCACCAGCAACCCCATATATACAGAGAAGGTGATGAACATACGGAAACTGCTGAACAAAATCGAGAAGCCGCACGGACTCTACCCCAACTTCCTCAGCCCCGTCAGCGGGAACTGGGTGCAGCATCATGTCTCTATAGGGGGCCTGGGGGACAGCTTCTACGAGTATTTGATCAAATCTTTTCTGATGTCAGACAAGACAGATGAAGAAGCCAAGAAGATGTATTATAATGCTCTGGAGGCCATCGAGAAGAATCTGGTGCAGAAGTCGGCCGGGGGTCTCACCTATTTCGCCGAGTGGAGAGGGGGGATGCTGGACCACAAAATGGGCCATCTGGCTTGCTTCTCCGGGGGGATGATCGCCATCGGGGCGGACGACGGGGAGGCGGAGAAGCGGCAGCACTATATGGACCTGGCCGCGGAGATCACGCACACCTGCCACGAGTCTTGGGAAGCCACTAAGCTCGGTCCGGAGGCATTCCGGTTCGACACCGGCGCCGAAGCCACGGCCACGCGCCTCAGCGACCGCTACTACATCCTGCGTCCCGAGGTGGTGGAGAGCTACCTGTACATGTGGAGGCTGACGCACGACCCCAAGTACCGGCAGTGGGGCTGGGAGGCAGTGGAGGCCCTGGAGAAGCACTGCCGAGTGGAGAGCGGCTTTTCTGGCATCCGAGACGTGTACGTCAGCACCCCCAGTCACGACAACATGCAGCAGAGCTTCTTCCTGGCAGAGACGCTGAAATATCTGTACCTGCTGTTCTCGGATGACGACCTCCTGCCCCTGGAGGACTGGGTCTTCAACACCGAGGCCCACCCACTGCCCGTGGTGCACCAGCAGTGTCTGCACGGGGGCGAGGGCGCGGAGCCGCAGCCCGGGCAGCAGCAATAG

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128853 lncRNA downstream 391161 4425354 ~ 4425572 (-) True G103149
TU128794 lncRNA downstream 663985 4152518 ~ 4152748 (-) True G103095
TU128793 lncRNA downstream 665816 4150499 ~ 4150917 (-) True G103094
TU128784 lncRNA downstream 677096 4138620 ~ 4139637 (-) True G103087
TU128741 lncRNA downstream 1032102 3784257 ~ 3784631 (-) True G103050
TU128989 lncRNA upstream 276656 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA upstream 276656 5115715 ~ 5124287 (-) False AMCG00010937
TU129052 lncRNA upstream 445271 5284330 ~ 5291900 (-) True AMCG00010946
TU129054 lncRNA upstream 492673 5331732 ~ 5334257 (-) True G103309
TU129082 lncRNA upstream 520916 5359975 ~ 5378226 (-) True G103329
AMCG00010927 mRNA downstream 80001 4723680 ~ 4736732 (-) True AMCG00010927
AMCG00010929 mRNA downstream 114283 4696019 ~ 4702450 (-) True AMCG00010929
AMCG00010928 mRNA downstream 125181 4661628 ~ 4691552 (-) True AMCG00010928
AMCG00010926 mRNA downstream 158417 4653449 ~ 4658316 (-) True AMCG00010926
AMCG00010925 mRNA downstream 166327 4644413 ~ 4650406 (-) False AMCG00010925
AMCG00010932 mRNA upstream 55860 4894919 ~ 4897557 (-) True AMCG00010932
AMCG00010931 mRNA upstream 139877 4978936 ~ 4981453 (-) True AMCG00010931
AMCG00010934 mRNA upstream 163827 5002886 ~ 5030530 (-) True AMCG00010934
AMCG00010940 mRNA upstream 257532 5096591 ~ 5103397 (-) True AMCG00010940
AMCG00010937 mRNA upstream 278163 5117222 ~ 5128684 (-) False AMCG00010937
TU128916 other downstream 166627 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 630759 4169793 ~ 4185974 (-) True G103112
TU128662 other downstream 1397557 3320813 ~ 3419176 (-) False G102990
TU128994 other upstream 295151 5134210 ~ 5140456 (-) False AMCG00010939
TU129184 other upstream 865711 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 3132565 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3980492 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 4015846 8854905 ~ 8863666 (-) False AMCG00011051

Expression Profile