RNA id: AMCG00010938


Basic Information

Item Value
RNA id AMCG00010938
length 2006
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00010938
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5141224 ~ 5149261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGTATGCCCTCACTAAGATGGCGTCTATTTCTTCCAGTGGGGTGGCGAGTTTTGTGTACGTCACGAAAAGGCTCAGCTTAATGACGCGGGGACGCTCAATGCGGAAGAATACGTCATCTTAAAGGACGGGCGCCTCTTCACAAGATGTCGTGGATCAGGGAGGGCGAGCTGACACTGCTGGAGAGGTTTTCTGCAAATATTCTGAAGGCTGGGCCGATGCCAAAACACATTGCTTTCATAATGGATGGCAACCGACGCTACGCCCGCAAACAACACGTCGAGCGGCAGGAGGGCCACACGCAGGGCTTCGACAAGCTGGCTGAGACACTACGCTGGTGTTTAAATCTGGAGATCCAGGAGGTGACGGTCTACGCGTTCAGTATCGAGAACTTCAAACGCTCCAAAGAGGAGGTGGATGGCTTGATGGAGCTGGCCAAGCAGAAGTTCGGCAAACTCCTGGAGGAGCAGGACAATCTGGAGAAGCACGGGGTGTGTATCCGAGTGCTGGGAGACCTGAGCCTCCTGCCCAAAGACCTGCAGGAGGTCATTGCCCGGGCTGTGCTGGCCACCAAGACCCACAACAAATGCTTTTTGAACGTGTGCTTCGCCTACACTTCCAGACATGAAATCAGCAACGCCGTGAGAGAGATGGCGTGGGGGGTGGAAGAGGGGCTCATCAAACCCAGCGATGTGTCCGAATTCCTGCTGAGCCGATGCCTGTACACCGGCAACTCCCCTGACCCCGATCTGCTCATCCGCACGTCCGGGGAGGTCCGGCTCAGCGACTTCCTGCTCTGGCAGTCCATCCTGTGGCCAGAATATTCCTTCTGGAACCTGTGCGACGCCATCCTGCAGTACCAGCTCAGTCACTGCTCCCTGCAGGCAAGTCCCTTTGCCCTTCTCCTTCagggttggAAAGCCAGGGATCGGCACCGAGAGGACCAGGCGCTGCAGCAGCTGGAGGCCGACCGGCTCTGTGTGTCCGACCTGCTGCAGCGGGAGGGCGGGGGGCGAGCCTCGGACCCCCAGCACCggcaggagctgctgcagcGCTACACGGCCGCCCGGGAGAAGCGGGTGCACGGCTTCCTGCGCAGCCTGCAGCAGAAGAGGGACCGCTTCTTCACGGACTTGAACGCGTCCCTGGCGTCCGTCAGCGCCTAGCCTCGGTGCCCAGGGAAGAGAGACCgaggtggggggcagggggtggcAATGGAGGAcgtttctatttaaaatgtgtacataatCGGCAATTTTACCCCTATGGGGCACGTGCGGAGAAAAGAGAAGGACTTCCTAGACTTGAAATAAACAGTTTCTAACACTatgctgattttaaatgtataaatactttcaatgttgtttttgtcttcccTTTCCCCCCCGACTCCCCCACAGCCATTTCTGTGTCAGGTTGTGCCACTGCAAAACAGGCAGGCGAATAATGTATCCTGACTTTGGGGGACTCAGCCAGCATACTGTAGTCACGATGTCCtgtaaaagtgttttattgcttttgtaAAATCATGAAATCtacagtattattaaaaaaataaacacccaaAAAACAGCTTTCTTGGCAGGAATGTAATTCTTTCTCTTGCTTGTTATTCTGGAATAGTACACTAATGGTGGTTAAATGGTGGTGCTTTAGAAAATAACACCGGGCAGATGTATTCCCCAGCACCAATAGGGAGCCACTCACAGCAGAGGATGCTTATTTTAAAGTTGATGACCTTGAAAAGGTTGCAATTTGTTGTCAATATTTTCACAACACATCAACTAACATTTACTACAAACTATAGAAAACTTTCTGGAACATCTACAGTTTGGAAGCTGCAGCTAACAAAAGAACAGTAAGGATTCAAATGCTGACTAATTTATAGCAATAAAATCTGATGACAGTTGCTTTACGTCTTCTGGTGTGTTATAGGAAGTCATTGCTTTCAGATATCTTGTTGTTTTAAGGTGGGCTTATTGTCAAATTGATGCAATCCTACAAGc

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0042462 eye photoreceptor cell development biological_process
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K11778 DHDDS, RER2, SRT1; ditrans,polycis-polyprenyl diphosphate synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128989 lncRNA downstream 12083 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA downstream 16937 5115715 ~ 5124287 (-) False AMCG00010937
TU128853 lncRNA downstream 715652 4425354 ~ 4425572 (-) True G103149
TU128794 lncRNA downstream 988476 4152518 ~ 4152748 (-) True G103095
TU128793 lncRNA downstream 990307 4150499 ~ 4150917 (-) True G103094
TU129052 lncRNA upstream 135069 5284330 ~ 5291900 (-) True AMCG00010946
TU129054 lncRNA upstream 182471 5331732 ~ 5334257 (-) True G103309
TU129082 lncRNA upstream 210714 5359975 ~ 5378226 (-) True G103329
TU129136 lncRNA upstream 409416 5558677 ~ 5615853 (-) True G103362
TU129231 lncRNA upstream 817678 5966939 ~ 5974307 (-) False AMCG00010966
AMCG00010939 mRNA downstream 715 5134053 ~ 5140509 (-) True AMCG00010939
AMCG00010937 mRNA downstream 12540 5117222 ~ 5128684 (-) False AMCG00010937
AMCG00010940 mRNA downstream 37827 5096591 ~ 5103397 (-) True AMCG00010940
AMCG00010934 mRNA downstream 110694 5002886 ~ 5030530 (-) True AMCG00010934
AMCG00010931 mRNA downstream 159771 4978936 ~ 4981453 (-) True AMCG00010931
AMCG00010944 mRNA upstream 26638 5175899 ~ 5203631 (-) True AMCG00010944
AMCG00010946 mRNA upstream 142493 5291754 ~ 5325424 (-) False AMCG00010946
AMCG00010947 mRNA upstream 186585 5335846 ~ 5347367 (-) True AMCG00010947
AMCG00010945 mRNA upstream 204682 5353943 ~ 5355562 (-) True AMCG00010945
AMCG00010948 mRNA upstream 224598 5373859 ~ 5383129 (-) True AMCG00010948
TU128994 other downstream 768 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 491118 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 955250 4169793 ~ 4185974 (-) True G103112
TU128662 other downstream 1722048 3320813 ~ 3419176 (-) False G102990
TU129184 other upstream 555509 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2822363 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3670290 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3705644 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 4085150 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile