RNA id: AMCG00010944


Basic Information

Item Value
RNA id AMCG00010944
length 3970
RNA type mRNA
GC content 0.47
exon number 20
gene id AMCG00010944
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5175899 ~ 5203631 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGCAGCGCATACCTGGCGGTGGGAGTGCCCAGATCTGCGGCTCATCCGCTCTCCTGCTGCGGGCTGTCGGGAGGGTCTAGTGACGGATCCACTCCGGATTAAGAGCCCGACTCCCACAATGGAGCCCATTGTATCCTGGGACCGACATCGAGTGGCCGAGTGGCTGAAAGGTCTGGACTCTGTCCTTCAGCATTATCCATTCGAAGAGTGGTCGTTGACGGGGAGAGACCTGCTACTGCTGTCCTACAAGGATTTGGAGAAACTTGGGGTGAAGAAGATCGGCCACCAAGAACTCATACTGGAGGCTGTGGAAAAGCTCTGTTCACTGAACTACGACATGATGGGCGAGAGCATGCGCTCGCTGACCGAGAAGCTCCGAACGATCGCCCACTCCCTGCCGGTGAGCATCCAGAGCCGCTGGCGCGTCCACCCCTACACCGGCCAGTCGGAGAGCCAGCTTCCCTCGGAAACTCTCCTCTCCGTCATCAATGTCATCACGGCGGCCAGGGGGCTCTTCTGCTGGATCAACAGGTATCTCTTTTCTCAACTGCACGACTACACTGCCACTAAAGACATCATCACATACTGCGGGGAGCTGGGGCAGAGCGTCCACAAGGACATCTCCGCATTCGAGAAAGAGAAGGACATCATATCGTCTTGTCGGAAGATCGTGGCTATCTGTGATGAGATCCTGATCagcagcccccccaccctcctgaATCACACTGCCACCCTAGAGAGTGTGGACCTGGTGCCCGCTTCTCCCGGAGAAACCCTGGGAATTGAAATCACGTCCACTGACTCCATCCTGCACTACGTTACGGGAACTGCATCAGAGTCACCAGCTGGATTCAGTGAGAAGATCTTAGCAGGAGACGAAGTTATTCAAGTCAATGACCAGGTTGTGaaggAGCCCGAAGCCCCGGAGCCATTCTCCATCCTCCAGAGGGTCGCCGCCTCGGTGCGATCTCTGTCGTTCAAAGCTGCCACTCTGGAATCCCAGGAGCAGAAGGGGCTGGAGTCTGGATCGGGAAGGGGTGCCGGACCCCAGCCCATCAGTTCCCACCCCAACCACAAGGGGGAGCTCCAGAGCAAGGAGGGAATTCCACAGCTTAACAGAGCAGAACGGACAGAGTTGGACAGGGCTCTCTCGCAGGTCTCCCCCGAGGCCCCCCAGACTGAGGTCAGCAGCGCCGAGCTCCAGCTCCGCCAGGCCAGCCGTCTCAGTGTGACGTCCCGCAGCTCATGTCCCGAAATGGCCGGACAGAGTGACGAGCAAGACGCAAGTAGCCCCAACTCAAAAGGCACCCGGACGGGAATGAGTCGGAGGCGCGTGTCCTGCCGGGAGCTGGGCCGAGCGGACTGTGACGGCTGGttgtggaagaagaaaaaggacaGCGGGGTCTTCGTGGCTCAAAAATGGCAGCGATTCTGGTTCGTGCTGAAGGGTCCGAACTTGTACTGGTACAACAGCCAGCAGGAAGAGAAAGCTGAGGGCCTGATTCAAGTCTCCACCTACCGCATCGAAGGTGCCGGAGAGCACAAGAGGAAATATGTGTTTCAGGTGTGCCATGAGCGGTTCCAGACCTTTTTCTTCGCTGCCGACAACGTCAACGATATGAGCAAGTGGATCAACTGCTTAATAATGGCGATACAGAAGTATAAGAATGAGAAAAAGAACCAGCCGCACAGGGAAGAAGACTGTTACAGCGAGACCGAGCCCGAGGATGAAGGATCCAATTCCCCCCAGGCCTCCAGGCACAAAGGCAAAGAGAAGAAGAGGAAAGAGATTAAACTGAGCTGTGGGACGGCTCCTTTAGTTGCAGAAAAAAAGCCAGGCGCCCCTGAGGATGAGATGGGGGTCCTTTTTAACCGTCTCAAGGAGGGTGGGGTGTCACTGTTAGGCAACGAACAGCCAATGACCAGAGACCACTTCAGGAGGTCCTTCATCAAGAGAAACAAGAACCCCATCATCAATGAGAAGGCCCTTACACTACGGGCTCTGCAGAGCACACTCAAAgCAAAAGAGGCCGAGCTGCAAACCATCAACAAGCTCCTGGACAACCCCGAGCTGACGTCAACCAAGTTCAGAGAGTGGAAGGAGAGGAACGAGGAACTGTGCCAGGAAATCGACAAGCTGACCAAGGCCAAGGCCATGGCCAAGGGGGCGGGAGGAAGACCGGGAGATGAAAGGGAGGAGAGCGGGGGGTCGTTGCTGGACAAAGACCGCCAGAGCGCAGCCTTGTCTCCAGGAGAAGGAGACCCCTCGAGGGACAGCGTGTTCAGCTTGAGGTTGAGCCAAGGAGAGCAACTGGTAGACATGGATCCCACAGACTCCTACAGGGTGTCAGCTGTGGAATCGGTGGCCTCCACAcccatgcaaacacacactgcagacgCAACACCCCAGGGAGAGAATTATTTCTTCATATGAAGCTTTTattcatactttatttttaaatactctgaGCTCAAGATAACCCGAACAGTGTGGATATTTGACTTTTCCAACAACAACTGTGTCCATTTTGAACTGGTTGGAGACTTCTCCTCCTGTTTTTAAACTGCGAAAGGAGGCCAAGACTGTTGTGTAACAAAAGAACCAAAAAACTACAGACGTACGAGAGAACGAGATCCTAATTGTTCACTCAGTCTTCTAAAACTCATAATTTtgtcatgaaaaaaacaaaataatatatttttgttttgtgataattgtgTCTATTAGGGCAATGGTCTTTGGTTAaggtcccccccaccccctcctttATCCAAGTGTAATTTTATGTGTAGATTTTAataggaacatttattttttaaagaaaatgtcttaatacatgtatgtatatattggttttatattaaaataaccttttataGAAACCACACTGTAAAAATAACTCTACTGTAATGTTGATACAAATAATGGTAAGAGGAGTCAGTATTTCTAcagtatttctatttttaaacaaatgcaaaaagtagaATTATGCATTAaaccataatcatcatcataatagttATCAATGAGGTAGACTTGGATTATGATCACCTTAAAGGCATGAGGATAGGGTGCAACACTAACCAGTTAAgatactgtatttgtttatgaaatCTGTTCAGTTTCTTTGCCATTCAGTTACATTGCATTCAACAAGCAAGGAAGCATcactataaaacaaaaccaaaatgaaaatataggCAGTCAAAGCAATGATAAATTTGCCTGCGCATGTATTTAGTAACACTAAAGACACTGTACAGGGAGATGTAGATGTATACTATGTATTCAATTGGTTTACCTAAGAATCCATCAAATACTTTCAAACTTGCTTGCTGGGTTTTCAACTGGCTCAAATTTAAACGTTTGAAGGCAAAGTACGTTTTGGCAATTCTTATAAACTGTGATTAGAAATAATTTTCATCTTTTCATATGAACCTGCTAGCACTTTACCCATTACTTCTGTGGATttggtgtttattttgattagaAATGGCATGTGTTGGCCATAGTAGTATTTCCTTTCTGTTTATCACCTGGTTCCTAGTGTGTTGTGTACCATATATGAATGTttgatggggcaaatggccttattgatattattttgtatctcaGGCTTAATGTAAATAAGAAAGAATGGATAATTTTCCCACTGTTTGTGATGTCTGACCTCTTTAACACATTTCAATCCATTTCACTCGCAACAGACAAGTCATTCTGTCAAGTGATGTGTTTCATGACAAGGACTGGTTttggaaaaaaactgaatccACAGCTTTTCTTGATGGTCTGCTTTTTATCAATCACAACCTTGGTTATTAATTCTGTACGACACGTTTTGGAATCAATCTTCTTTTAAAATCATGTGCAGACAAATATCACATTTTAGTtgtgtaaattacatttacattacaagtACATGTCAGAAATGTGCATCAATGTCTGTTAGTAATAAACGTGTAATTACA

Function

GO: NA

KEGG:

id description
K23783 CNKSR1, CNK1; connector enhancer of kinase suppressor of Ras 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128989 lncRNA downstream 46758 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA downstream 51612 5115715 ~ 5124287 (-) False AMCG00010937
TU128853 lncRNA downstream 750327 4425354 ~ 4425572 (-) True G103149
TU128794 lncRNA downstream 1023151 4152518 ~ 4152748 (-) True G103095
TU128793 lncRNA downstream 1024982 4150499 ~ 4150917 (-) True G103094
TU129052 lncRNA upstream 80699 5284330 ~ 5291900 (-) True AMCG00010946
TU129054 lncRNA upstream 128101 5331732 ~ 5334257 (-) True G103309
TU129082 lncRNA upstream 156344 5359975 ~ 5378226 (-) True G103329
TU129136 lncRNA upstream 355046 5558677 ~ 5615853 (-) True G103362
TU129231 lncRNA upstream 763308 5966939 ~ 5974307 (-) False AMCG00010966
AMCG00010938 mRNA downstream 26638 5141224 ~ 5149261 (-) True AMCG00010938
AMCG00010939 mRNA downstream 35390 5134053 ~ 5140509 (-) True AMCG00010939
AMCG00010937 mRNA downstream 47215 5117222 ~ 5128684 (-) False AMCG00010937
AMCG00010940 mRNA downstream 72502 5096591 ~ 5103397 (-) True AMCG00010940
AMCG00010934 mRNA downstream 145369 5002886 ~ 5030530 (-) True AMCG00010934
AMCG00010946 mRNA upstream 88123 5291754 ~ 5325424 (-) False AMCG00010946
AMCG00010947 mRNA upstream 132215 5335846 ~ 5347367 (-) True AMCG00010947
AMCG00010945 mRNA upstream 150312 5353943 ~ 5355562 (-) True AMCG00010945
AMCG00010948 mRNA upstream 170228 5373859 ~ 5383129 (-) True AMCG00010948
AMCG00010949 mRNA upstream 196658 5400289 ~ 5410795 (-) True AMCG00010949
TU128994 other downstream 35443 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 525793 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 989925 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 1756723 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 1848340 3325858 ~ 3327559 (-) False AMCG00010895
TU129184 other upstream 501139 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2767993 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3615920 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3651274 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 4030780 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile