RNA id: AMCG00010945


Basic Information

Item Value
RNA id AMCG00010945
length 669
RNA type mRNA
GC content 0.51
exon number 3
gene id AMCG00010945
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5353943 ~ 5355562 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGCTATCAGTCCTGTGCGATCTGTAAGGAGTTGCTACGAAGCCGTGTGCTGCATATCGGAACAGAGTCTCGCCATCTCCCGGAATAAACCCCCGATGACGGATGAGCCCATGACCGTGCTGTACGACATGAATGACTGCTATTCCAAACTGAAGGAGCTGGTGCCCAGCATCCCGCAGGACAAATCCGTCAGCCAGGTGGAGATCCTGCAGCACGTCATCGATTATATCTTCGACCTGCAGATCGCGCTGGAAAACGAGTCGTCGGAGAAAACGCCAGAAGTCGTGCTGTCACTGAAGGCATCGGACTTCGCTTGTGAAGATAGCAGGGGGCTGTGCCACTAGCCCCACAGCGGCGCCGTCACTTCCTAACAGAAAAGTGTGCAGGTGCGGGGAAACACATGGCTCCACTTCACTCCAGGCAACaagaggaggagggtgggggtgaCGAACTGGAGAGAAAAAGGGCTCTTGACGCAAGATTAACCCCATCTCCACACAACCATTCAACCTCTGGACACCAGACACTTAGACTTACCAAAGCCCTAACGTGGACTGAAAAAGCTGATTTTACTActtcttgtgtttcttttataaatgtacatctaTAAAAGAGTGAGCTAGTTTTTACCACACATTTCAATCAAACCCTTTCAAAGTCAACGC

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K17694 ID3; DNA-binding protein inhibitor ID3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129054 lncRNA downstream 19686 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 62043 5284330 ~ 5291900 (-) True AMCG00010946
TU128989 lncRNA downstream 224802 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA downstream 229656 5115715 ~ 5124287 (-) False AMCG00010937
TU128853 lncRNA downstream 928371 4425354 ~ 4425572 (-) True G103149
TU129082 lncRNA upstream 4413 5359975 ~ 5378226 (-) True G103329
TU129136 lncRNA upstream 203115 5558677 ~ 5615853 (-) True G103362
TU129231 lncRNA upstream 611377 5966939 ~ 5974307 (-) False AMCG00010966
TU129292 lncRNA upstream 1028919 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 1158301 6513863 ~ 6514123 (-) True G103503
AMCG00010947 mRNA downstream 6576 5335846 ~ 5347367 (-) True AMCG00010947
AMCG00010946 mRNA downstream 28519 5291754 ~ 5325424 (-) False AMCG00010946
AMCG00010944 mRNA downstream 150312 5175899 ~ 5203631 (-) True AMCG00010944
AMCG00010938 mRNA downstream 204682 5141224 ~ 5149261 (-) True AMCG00010938
AMCG00010939 mRNA downstream 213434 5134053 ~ 5140509 (-) True AMCG00010939
AMCG00010948 mRNA upstream 18297 5373859 ~ 5383129 (-) True AMCG00010948
AMCG00010949 mRNA upstream 44727 5400289 ~ 5410795 (-) True AMCG00010949
AMCG00010950 mRNA upstream 59970 5415532 ~ 5431128 (-) True AMCG00010950
AMCG00010953 mRNA upstream 110771 5466333 ~ 5478561 (-) True AMCG00010953
AMCG00010952 mRNA upstream 126774 5482336 ~ 5489882 (-) True AMCG00010952
TU128994 other downstream 213487 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 703837 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1167969 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 1934767 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 2026384 3325858 ~ 3327559 (-) False AMCG00010895
TU129184 other upstream 349208 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2616062 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3463989 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3499343 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3878849 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile