RNA id: AMCG00010946


Basic Information

Item Value
RNA id AMCG00010946
length 5631
RNA type mRNA
GC content 0.51
exon number 27
gene id AMCG00010946
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5284330 ~ 5325424 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggagagagagagagagagagagagagagagagagagacagagggagagagagagagagagagagagctgcgcctccttcttctccctcttctGTAGGTGCAGGACACGCACAGTCAGAAACATGCCGGAGCGCATTAGTATCGCCGAGTTTGTTACCCTCACCAACGAGGACATCGCCTCCCCGGCCAGCTGCAGCTTCCCCCTGAAAATGAACGACTGCAGGAACACGGTGGCCGccttggaggagtcacTGGACATGGACCAGAGCACCCTGCAGAGAATGAAGAAGCTGATGAAGGCCATTCATTCCTCGGGACTGTCTCACGTGGAGAGTAAGGACCAGTACATCGAGGTGCTGGAGAACCTGGGCAACAGCCACCTGTCCCAGGACAACAACGAGGTGTCCACGGGCTTCCTGAACCTGGCCGTGTTCACCCGGGAGGTCACCGCACTGCTCAAGAACCTGATCCAGAACCTGAACAACATCATGTCCTTCCCTCTGGAGAATGTGCTGAAGGGAGAGCTGAGAGATGGCAGACAGgaGCTGAAGAAACAGATTGAAAAGAGCTGGAAGGACTATGAAATAAAAGTgacgaagctggagaaggagaggcGGGAGAAAGCCAAGCAGCTGGGCGTGATCAGGACAGAGGTGTCTGCGGCGGAGATCGCTGAGGAgatggagaaggagagaaggacaCTGCAGCTGCAAATGTGTGAGTACTTCATTAAAACCCAGGAGGTGAAACTCCGACAGGGCCCTGACCTGCTGCAGAGTCTCATTAAGTACTTCCAGGCACAACTCAAACATTGCAGCCCCTCAGATTTTctGCGGCAGGCCCAGGACGAAGAGATGAGACACCTGTCCCAGCTCCGCGACTCCCTGAGGGGCTTCCTGCAGGTGGAGAGCAAAGAGGAGCATCTGATAAGGAAAAACTCTGGGAACGGGTACAGCATCCATCAGCCCCAGGGGAACAAGCAGTACGGCACGGAGAAATCAGGGTTCCTCCTGAAGAAGAGCGACGGAATCAGGAAAGTCTGGCAGAAAAGGAAGTGTGGCGTCAAATATGGCTGCCTGACAATCTCTCACAGCACAATCAACAGGCCCCCGGCAAAGCTGAACCTCCTGACCTGCCAGGTCCGTCCCAACCCCGAGGAGAGGAGGACCTTCGACCTTGTGACACATAACAGGACATACCACTTCCAGGCAGAGGACGAGCAGGAATGTGTCGCGTGGGTGTCCGTCCTCCAGAACAGTAAGGAGGAGGCCCTGAATGCAGCCTTCAGAGGAGACCAGAGTCAGTTCAAGGACAGCAGCCTGGAGGAGCTGGCCCGAGCCGTTATCACCGAGGTGCGCCACATGCCGGGGAACGAGGTGTGCTGCGACTGCGGAGCTCCAGATCCAACATGGCTGTCCACCAACCTGGGCATCCTGACGTGTATCGAGTGCTCTGGGATCCACCGGGAGCTGGGCGTGCACTACTCCCGGATCCAGTCCCTCACCCTAGACATGCTCAGCACTTCGGAGCTGCTGCTGGCCGTCAGTATTGGCAACACAAGGTTCAACGACATCATGGAAGCGGGACTGCCCAGCGATTCGACCAAACCTGTCCCAAACAGCGACATGAATGCCAGGAAGGAGTACATCGTTGCCAAGTACGCCGACCGCAGATACGTTCAGCGGAGGGACTATGAAGATCCCTGTTGTCTCTTTGAGGCCATCAAGGGCAGAGACATCACAGCGCTGTTACAGATCTATGCAGAAGGAGAAGACTTGGTGAAACCAGTGGTCATCCCTGAAGGCCAGGACCTGCGTGAGACCGCACTACACCTGGCTGTTAGGCTGGCAGAGAAGAGCTCCCTGGCACTGGTGGACTTCCTCACACAGAATAGCGGGTGTTTGGAGAAAAGAACGTCGGACGGCAACACGGCCCTGCATTACAGCTGCCTGCACAACAAGACCGAGTGCCTCAAACTGCTGCTCAAGGGAAAGGCCACTCTGAACACGGTCAACGGTGCCGGGGAGACAGCACTGGACATAGCAAAGAGGCTCCAACACACGCAGTGTATAGAACTGCTGGAGTTGGCTCTGGCAGGGAAATTCAACTCTCAGATCCACGTGGAGTACATGTGGGAGACCCCCCAAGAGTTGATGTACGACAGCGAGGACGAACTAGACGAGAGGGTCAGCCCCCTGCAGAGGTCCTCACGCTCCAGCCTGGCCCCTGGCCCCTCGCCCTCGCGCTGGAGCCTGTCCAGCACCAGCATCTCCAACAAGACCTACGAGAACATTGACTTCCTGTACCGCAGCCCCACGGCCTGTAGCGCCCCCTGCGCCGGGCCGCCGCCCCCCCTGCCTGCCAAGAGCATCCAGAGAGGACGCTCAGACCCGCAGATCTCCatctccacctccacctccacacGGGAGGGGAACGTCCCGGTCCGCCGCTCCTCCAACCCCCTCTCCCAGCGCCAGAGCGCTGCCGTGCAGGATGGCCAGGGCTCCCGCGCACATGCCACCCCTCCCCGGTCCCCCCGCGACGGCGTGTACCGCTGCCAGAGGCAGACGGTGTTCTGGGAGAGCCAGCCGGCCCAAGACAGCCGCCGAGGGGCCGGAGAGCAGGGCCACAGCCCACCCGGCTCAGACATGAAGCCGCCCACCTCCCCGCTAGCACACCTGGGCCCAGTCAGCTCTGAGAAGACGACGTCGTACCGGCGCACGAGCAGCGGCGGGCAGGGGAAGTGTGCTGTGACCTCGCCCAGCTGCGCCGGCAGCCAAGAGGACCTGTACAGCAGTCTGAGCCCCACCTCGCTGCCCATACCTGTGCCCATGACACGGCCCCGGAAGAATGCCATGGTGAAGCCGCGGCAGAAGCGCGTGCAGGCGCTGGTGGACTGCAAAACGATGAACACCGAGCAGCTGGCGTTCGCTAAGGACGAGGTGATCGTGGTGACTGGGAAGGAGGACTCGCACTGGTGGAAGGGCCACATTGATGGAGACCTGTCGAGGGCGGGAACGTTCCCGGTGAATTATGTGCACGTCCTAGGAGATTAGCGTCTCCCCGTCCTCTGCATCCGAAACCTTGCAGAGTGcaggaaggaggaagaggaggactgTGGCTGCCGTAGGGGAATTGGACGTTTGACCAGCACGGATTGATgtaacagacaaaaaaaacaaactacaactCTGGAGAAATAAAAACTCCTGTCTGTTTACCAATCTCCAGCAGTGGAATGGCTCTTCCGTTGTGTATTTCATTTCCTAATCTTCCTCCAGTCTTTACACGCGTGCGAACTTGTGCCCCAGCAACAGCCGCCTTCAAGCGGTGAAACGGACCAAAACTATACAGATAGAAGGACAAATATCTCATCCTTCCACACTTCTGTCTTGGACCAAAGGAACAGTGTTTCTTTTCTCTCGGTGTGTTTAACTGTTCATCGCCCTTCCAACTGGACATACCTACTGAGGGCAAGAAGTCCGCTGACTCAGTGGCTGGGGAACATCGTGGACCAGAACTAGAGGGGGCTTCTGTTCTCTGTGAGGATCTCGTGCAATCCATGGCGGAGCTGGTCTGTGgatcgatttttttttttctcacgaGAGTCGGTTCCTGTCTTTGCCGTGACGTGCTTGGCCGGGAACGACGAGAAACCTGGCACAGCCTGACTTCTACAGCTTGCCCATATGGTGTTTATCAGAAAGCATGTGGGGCTCTTGCATTAGTATACATTAAACTAAAATGAGCTTGCGAGCTTTTGCTATTGAGGAAGGAAGGAACAAGATGGATCTTTCCCTTGTGTCTGAcattaaaacatacttttttggGATACCTTAAAAGTTGTTTTCACACCTAAAGGAGTGGATTGATTCTGACTAAATGCCCACTGCCCATTAAACTCTGGCATCCTATGTGGAAAGGTGCCCACGTCTAAGGTGAGGCTGGTGAAGCAGATTCCTGTGAATTGATGCCTGGCTTTCCAGTCTGAACACAGGGCTGAAGGAGTGAAATACTGGGAGAAATGGAAATGCGATCGAGGCTTTCATTAGAAATTAGATCGAGACTCCATTTTGCTTTCATTAACAGAACTGGCAAAGCTCTGTGGATCAGAACAATAATACAGCCGCAACACTCAGAGCCACAGGACAGGTGTGAAGACGCGCCTGCAGTCTTTGTTAAACTCGCTGCCTTTCACGTTGGACAACAATGTCCTCTTCATGATCAATCAATCTGATTGGGTAGCTCACTGACCGAGACACCCGGCATCCGCTTCCCCATTGCTCAAAGGCGCCCGGTTTTACAATTCATTTATACGATTTTGTTGTTCACTTTTGAAAACCCATTTGAACCTGGCTTTTGGGGAACCGCCCGAAAACAGCCATCCGCCCCAAATTGCCGACATGGTAGAGAACCGACCAGCACTGAAACTCATGCTCCAAAAGTCTTTACTTTAAACCTGTTGTGCAAAatgatatctatatatacatccATACACTGTGTACTGTAGTATATGTATTCTCTAGTATCAGTATCAGTCTCAGTGCATGTACTATAGTACACCTCTCTATATTAGAGTAGATTGATTCCACTCCTGCAGCGCCACACTGTCTGTCTGGTTTTGTTCCAAACAATGAACTGGAtgaattgaacccttctctTCCAGACTGAAATGTTCTGTAGGTAATTAACAAATGGTAAGGTATCCGCGgtaagttttagataagcctaccttagtaaataatgtaattaagtcattgggagctcctgttggaaccAGTAAATACTGTCAGAACAGTAAAAGGGAAAAACTCTCCTGTAAAGACAGTACATTTGGAAATGGACAGGTTATCCCACctatgcatacaaataaaaaactattcCCTTCCCAAACTCTATTGGAGATCAATGTATTCCCAATAAAAGACTGATGGTGTTGTGGAGGTTTGGAACCATTTGGTACCAGGTAGACCAAAAGactacacaataaaataatcataataatattaagagaACAATACTCTGAATTTTCTCACATTCACATGAATTACTccttatacattattaattacagtaaatggACTAGAAGGGAATATTGCTTATTGTCTGCAGCCCAATAGCATTGGTATAAAATATTCAGTAGTGTTGGAAAGATTACgtgattttaattgttaactGCAAAACCACTTACGTTTCCAGACCGCCAATAGTAAAAGCTGTATATCCTTTAAAGTCTAGCTATATCTATATATGCTTTTTCTGGGTCTACTTAATTTTATACaactgtgtatattttattaaacatacaCCCCCACATGCAACATCTTTCTTTCGTTTCCATTTAATAAAATCACTCTGCAAACAAAATCACTTTACTGTCAAAAggaccattttaaaatattggaatacaaaataaagaaagtgcAAGCTGCATAAAGCTATAAGCCCTCTCCAGAAATGAGTGCTGTAAAAGAGGAGAGCAGCGGCGACTCTGGGGAAGAATGATGTAAGAGTCGTTACTCAGCTGATGCGGAGGATGCTACAATATTCATGAAATCAGAGCGAGGGTGTTAATACAGAAAATAGTATTGCGAGTTTGATGAAGATGCGCCAGGACAAGACTGAGTCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128989 lncRNA downstream 162613 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA downstream 167467 5115715 ~ 5124287 (-) False AMCG00010937
TU128853 lncRNA downstream 866182 4425354 ~ 4425572 (-) True G103149
TU128794 lncRNA downstream 1139006 4152518 ~ 4152748 (-) True G103095
TU128793 lncRNA downstream 1140837 4150499 ~ 4150917 (-) True G103094
TU129054 lncRNA upstream 6308 5331732 ~ 5334257 (-) True G103309
TU129082 lncRNA upstream 34551 5359975 ~ 5378226 (-) True G103329
TU129136 lncRNA upstream 233253 5558677 ~ 5615853 (-) True G103362
TU129231 lncRNA upstream 641515 5966939 ~ 5974307 (-) False AMCG00010966
TU129292 lncRNA upstream 1059057 6384481 ~ 6386604 (-) True G103473
AMCG00010944 mRNA downstream 88123 5175899 ~ 5203631 (-) True AMCG00010944
AMCG00010938 mRNA downstream 142493 5141224 ~ 5149261 (-) True AMCG00010938
AMCG00010939 mRNA downstream 151245 5134053 ~ 5140509 (-) True AMCG00010939
AMCG00010937 mRNA downstream 163070 5117222 ~ 5128684 (-) False AMCG00010937
AMCG00010940 mRNA downstream 188357 5096591 ~ 5103397 (-) True AMCG00010940
AMCG00010947 mRNA upstream 10422 5335846 ~ 5347367 (-) True AMCG00010947
AMCG00010945 mRNA upstream 28519 5353943 ~ 5355562 (-) True AMCG00010945
AMCG00010948 mRNA upstream 48435 5373859 ~ 5383129 (-) True AMCG00010948
AMCG00010949 mRNA upstream 74865 5400289 ~ 5410795 (-) True AMCG00010949
AMCG00010950 mRNA upstream 90108 5415532 ~ 5431128 (-) True AMCG00010950
TU128994 other downstream 151298 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 641648 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1105780 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 1872578 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 1964195 3325858 ~ 3327559 (-) False AMCG00010895
TU129184 other upstream 379346 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2646200 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3494127 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3529481 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3908987 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile