RNA id: AMCG00010947


Basic Information

Item Value
RNA id AMCG00010947
length 1431
RNA type mRNA
GC content 0.63
exon number 7
gene id AMCG00010947
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5335846 ~ 5347367 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGCGGATACCCAAAGGGCTTTCTCCGGCTTCTGTGAGAGGCGCCGCCGGACACTCGGGTGCCCAGAAGAAACTCCTATCCGGGGTCAAGACCGAGTTCTTCAGCACCGGCCTCTCTAGCCCCACGATTAGCTCTGTACCGGCCGGGTACTTCAACCAGATCTGCAACACGTCCACCACGGACCAGAGGGCGAACTGCCTGTACACGACCCCGCATGGACCCGAAGCCAAATCCATCAGATCTGCCTCCGGGAGACTGCCGGCGAAGAGAAAGCTGGATCTGGAAGGCAATGATCCCCTTTATCTGCCAGACTTCCGCACCCCCAAGGGAAAGTGCAAGACCACCCGAATGCCCAGCCCCAAGACTCCCAAGTCCCCCGGTGAGCGCACACGGTACGACACCTCCCTGGGGCTGCTCACCAAGAAGTTCGTGGGCCTGCTGAGCGAGTCTGCGGACGGCGTACTGGACCTGAACTGGGCCGCCGAGGTGCTGGAGGTGCAGAAGCGGCGCATCTACGACATCACCAACGTGCTGGAGGGCGTGCAGCTGATCCGCAAGAAATCCAAGAACAACATCCAGTGGGTGATGGGGGGGGTGTTCGAGAGCTCGTCGGCGGCCTCGGAGAAGCAGCGCGGCCTGCGGAAGgagcaggaggagctggagcgcGCGGAGAAGGCCCTGGACGAGCTGATCCTCTCGAGCAGCAGCCAGCTGAAGGAGCTGACCGAGCACAGGGACAACCAACGATATCCTCTCACTGCGGGGGGCTCCTCTAGGGCGGGGGGAGGGGGTCTCCGTGGGATTGCACAGCCTATCCCACACAGTGATAGGGGCTCAATGTCACGTCTCTGCTCTCCTTCACTCCTCCGTACGCTGGGCTATGTGACCTATCAGGACATCCGCTCCATTGCCAGCCTCCAGGACCAGACGGTCATCGCTATCAAAGCCCCCTCGGAGACCAAGCTGGAGGTGCCGGAGTCCACCggaGACTCCCTGAAGATCTACCTGAAGAGTAAGAACGGCCCCATCGAGGTGTACCTCTGCCCGGAGGAGGGCCTTGATGACAGTAGCCCAGTCAAAACCAGCACCCCCCAAAAGGAGGAGTACCCCCCAGCCCCGGCCCCATCAACCCCGCTGCACGCCACCATCAAGCAAGAGCCCACCGAAGGGCAGGCGGCAGATCCCAGCAAGCCCGCGCCCACAGCCTGCACCCTCCTAGATGTGGAGGGGATCCTGGGCCTGCCCCCCAGCCTGCTGCAGATCACCGAGGACCagctgccctccacctcctacGCTTCCGACTCGGCCCCCTTCGTCAGCTTCTCCCCCCCGCTGGACCAAGACGATTACCTGTGGGGACTGGAGGACGGGGAGGGTGTCTCGGACTTCTTTGACACCTACGACCTGGGGGACCTGCTCAAGACCTGA

Function

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0044424 obsolete intracellular part cellular_component

KEGG:

id description
K09389 E2F2; transcription factor E2F2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129054 lncRNA downstream 1589 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 43946 5284330 ~ 5291900 (-) True AMCG00010946
TU128989 lncRNA downstream 206705 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA downstream 211559 5115715 ~ 5124287 (-) False AMCG00010937
TU128853 lncRNA downstream 910274 4425354 ~ 4425572 (-) True G103149
TU129082 lncRNA upstream 12608 5359975 ~ 5378226 (-) True G103329
TU129136 lncRNA upstream 211310 5558677 ~ 5615853 (-) True G103362
TU129231 lncRNA upstream 619572 5966939 ~ 5974307 (-) False AMCG00010966
TU129292 lncRNA upstream 1037114 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 1166496 6513863 ~ 6514123 (-) True G103503
AMCG00010946 mRNA downstream 10422 5291754 ~ 5325424 (-) False AMCG00010946
AMCG00010944 mRNA downstream 132215 5175899 ~ 5203631 (-) True AMCG00010944
AMCG00010938 mRNA downstream 186585 5141224 ~ 5149261 (-) True AMCG00010938
AMCG00010939 mRNA downstream 195337 5134053 ~ 5140509 (-) True AMCG00010939
AMCG00010937 mRNA downstream 207162 5117222 ~ 5128684 (-) False AMCG00010937
AMCG00010945 mRNA upstream 6576 5353943 ~ 5355562 (-) True AMCG00010945
AMCG00010948 mRNA upstream 26492 5373859 ~ 5383129 (-) True AMCG00010948
AMCG00010949 mRNA upstream 52922 5400289 ~ 5410795 (-) True AMCG00010949
AMCG00010950 mRNA upstream 68165 5415532 ~ 5431128 (-) True AMCG00010950
AMCG00010953 mRNA upstream 118966 5466333 ~ 5478561 (-) True AMCG00010953
TU128994 other downstream 195390 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 685740 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1149872 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 1916670 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 2008287 3325858 ~ 3327559 (-) False AMCG00010895
TU129184 other upstream 357403 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2624257 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3472184 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3507538 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3887044 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU260534 True 249 lncRNA 0.53 2 NC_053130.1 3702592 ~ 3730541 (+)
tiger barb (Puntius tetrazona) TU260534 False 1831 TUCP 0.55 8 NW_025047824.1 697230 ~ 703264 (+)