RNA id: AMCG00010948


Basic Information

Item Value
RNA id AMCG00010948
length 207
RNA type mRNA
GC content 0.65
exon number 2
gene id AMCG00010948
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5373859 ~ 5383129 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGCGCTCGGAGCTCTGTGCGGTTTGTGTGCCGCCTTTGTTTGGGCAGTGTGGCGCTCGGAGGGAAAGCCATCAGCAGGGCCGCCATGAGTGAGGGACCCCGCTGCCCTCGCTGTCTCCAGCCAGTCTGCCGCAACATCTGGATCTCACATCAGGCAGGACTCCCGGAGGAGGGGCGCGGGGGGGAGGAGGTTCTGTACCCATAA

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0007599 hemostasis biological_process

KEGG:

id description
ko04512 ECM-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129054 lncRNA downstream 39602 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 81959 5284330 ~ 5291900 (-) True AMCG00010946
TU128989 lncRNA downstream 244718 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA downstream 249572 5115715 ~ 5124287 (-) False AMCG00010937
TU128853 lncRNA downstream 948287 4425354 ~ 4425572 (-) True G103149
TU129136 lncRNA upstream 175548 5558677 ~ 5615853 (-) True G103362
TU129231 lncRNA upstream 583810 5966939 ~ 5974307 (-) False AMCG00010966
TU129292 lncRNA upstream 1001352 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 1130734 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 1240952 6624081 ~ 6627452 (-) True G103539
AMCG00010945 mRNA downstream 18297 5353943 ~ 5355562 (-) True AMCG00010945
AMCG00010947 mRNA downstream 26492 5335846 ~ 5347367 (-) True AMCG00010947
AMCG00010946 mRNA downstream 48435 5291754 ~ 5325424 (-) False AMCG00010946
AMCG00010944 mRNA downstream 170228 5175899 ~ 5203631 (-) True AMCG00010944
AMCG00010938 mRNA downstream 224598 5141224 ~ 5149261 (-) True AMCG00010938
AMCG00010949 mRNA upstream 17160 5400289 ~ 5410795 (-) True AMCG00010949
AMCG00010950 mRNA upstream 32403 5415532 ~ 5431128 (-) True AMCG00010950
AMCG00010953 mRNA upstream 83204 5466333 ~ 5478561 (-) True AMCG00010953
AMCG00010952 mRNA upstream 99207 5482336 ~ 5489882 (-) True AMCG00010952
AMCG00010955 mRNA upstream 237166 5620295 ~ 5625529 (-) True AMCG00010955
TU128994 other downstream 233403 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 723753 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1187885 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 1954683 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 2046300 3325858 ~ 3327559 (-) False AMCG00010895
TU129184 other upstream 321641 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2588495 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3436422 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3471776 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3851282 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile