RNA id: AMCG00010949


Basic Information

Item Value
RNA id AMCG00010949
length 2841
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00010949
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5400289 ~ 5410795 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCAGATGCCTTCATGGTCCATGTTGTAAtctcaattatttcaattttgtttcgGCAAAGGAGAGatgtcattttttaaaggaacaaatGTTCATTTCTGTAAAAATGGGGGGTCCACTTGATCCATAGGAGGATCCGGGACTAACCGACTAACTGAATGTCGTTTGTGAATAATTAAGCGGGTGTAAGATGGCGCTCATTAATAATTCATGTGTTCTTTCATTGGACTGGGAGGAAGATGGGAAGCACAAGGAAGGAAGAGGGGAATTGTTGGCCAATGATAACTCACAAATGAGATGGAAAAGGGAGGGagttaaatacaatacattttaaaggtctTATGGACACTTTTCTAAGAGTTTTTGATTAGGATCATTAACATATCGTCTGTCTTAGTGGATTCAAGGACATTTGGTCTTAAGGACTTAAAGAATACAAGATCAAGGGAGTCTTGGCTCTTCCAAGAAAACTGGTAACAAGTTTGAAAACAAGTGCTCAGAGTTCAGTTTctctaaaaaacatttttgcttttcctGTAAATGGAGAACATTAGCACTGAGCTGTTGTCCTGATATGGTAGCGAGTAATGACTGCCTGTTTGTAGCCTGAACTACCCCTTCTTCCTTCCCGCATCTTGCATTCCTGATTTAATgctacaattgtatttttcaagttCAACCGTGTTCTCATAACTGTCTGTAGGGGTTGCAGAAGTATGACATCTGGATCAGCAGTGGCCCACAAAACCCTTAACATAGTCTGTGTCTCTAAGAACTGGTGCTTTtccttatcttttttttttctcctgattCCAAGCATGCAAGGTCAGACTAGGGCAGCTTGGCAGCCAATTTCACTCACAGGTCCCCAGGAAGGTTACTGGAACATTAACACTGCAATGTTATTATAACCGAGCCAATGAGAAGTACCTATGGCCTGTGATAAATGAGATCTTGACAGCTGGCCTCCACTGAATGCATTTCATTGAAAATGGGTATTGTACACCGTAAAGAGTCTGAGTATTGAGCCTGGGATGGATGACTCGAGAATCCAACCACAGTTTTCCTATGCACAGTGGCCTTCATTTTAAGCAGCACTGTCGTATGTATGAAAACATTGCCACACTGCAAAGCCTACAATCGTCTATAAACAGGCCAGTCCGATTATAGAGTATAATACAACCATTTCTCTGTCTGGAGTCTTAACATGCAGTCAAAGGTGAGGCTTCAGACTGCCagaaagtgtaaatatatagattttcaGCCACACTTAATGTCAAAGGTCCGTATTCATAAAACCTTTACATCCACAAGAGGTTTACAGCTGCTTTGTGTCTTATTCAGTGTCAGGCATTGTTCTGTAACCATGCAGACAGACAGCTTCTATCACATGGTACGCTGCAACCTCCACGGCAGGCTGGGAGCTTCGGTGTGGACATGATCTTCGTCCACCTCTAGTAACGGGTGTGCCCCAAGGATCTGTccagggccccctcctgttctctctctacacccaCTCTCTGGGACCCACCAGTTGTTCTCTTTCTACTTCCTTGTAGGTGATGTGcagatcttcctttctttccctaTTCTGACtccctcatcccctcttgcatctcctcctgtctctctgctctctccacCTGCGTGCACTCACATCATCTCAAGCTTAACTtgtccaaatctgatctcctcttcttCCCCTCATCCTCCTCGCCCTCTTCCGATCTCTGCATTTAAATTCCCCTGGAATCTACCGCTCTCGCACCACTCCTGCCTACTTAATTATTgttagcacttttgttttactgcaacTCCTATGACTACCCCTCATCTTTAGCACACACCTCGATGTTAACTGCATTATGTCTGaacttgttagctcattgtactggGATGTATgctgattgtattactgtactttgtaatgtttggaaatgtttcttatgtaaactgtaaatcgTCCTGGATACGGGcgtctgctatgaaataaagaataatgGTCTAAGGACCACAACTGGCAGTGGAGTAACAGTGACCTGGTTGGCAAAAAAACCTACTTAAGTTTCCCCCTGGAGCATTTTTCAAGTTAACAGGTGTTGTGCGAAGTATCTTAACACACTGCAGTGCCTGTGTCTGTGCTAATTAAGGGAAAAACTCCAATGTTTAATGAGTTCAGTTCTTGCAGTGTTTCCTGCCCCAGGCCCTAACCTGTGTTACCCCCTTAGGGATGCGCCAGGGGTACGACGAGGGCACCCAATACCGCTCTGCCATCTACACGTACAGCCCCCAGCAGCTGCAGACGGCTCTGCACTCCAAGGAGGTCTATCAGCAGGAGCTGTCGGGAAAGGGCTTTGGGCCGATCACGACGGAGATCCGTGTGGCTCCTGACTTCTACTACGCTGAAGATTATCACCAGCAGTATCTCCACAAGGTGCCCAAGGGATACTGTGGGCTGAAGGGCACGGGCGTGAGCTGCCCCATCGGCCTGAGCGCCCGAGAGGAGCTGTGAGGGTGGAGACCCAGGCCCTCAACCagcagtggggaaaaaacaaacgggtatatatatagtatgtatgATGTGTAGAATCTGTACTGGAAACAATATTTGAGTCACAAGGCAGCAAATCACACAAAAGGGTCTGAAAaagcttttatatttttgtgtttttttttattgtttaggAGATTGTAAACTGTggtgtcttgtgtgtgtatgctgcTGGTTTACATGCTCACTCACTTTGACACTGTGTCTTTTTATCTGACAAAGCACTTACTAATTTGTCATCAGGAAGCTGGTTTtagattcattaaaaaatatcctCAAGGGTCTGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129082 lncRNA downstream 22063 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 66032 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 108389 5284330 ~ 5291900 (-) True AMCG00010946
TU128989 lncRNA downstream 271148 5115715 ~ 5129141 (-) True AMCG00010937
TU128990 lncRNA downstream 276002 5115715 ~ 5124287 (-) False AMCG00010937
TU129136 lncRNA upstream 147882 5558677 ~ 5615853 (-) True G103362
TU129231 lncRNA upstream 556144 5966939 ~ 5974307 (-) False AMCG00010966
TU129292 lncRNA upstream 973686 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 1103068 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 1213286 6624081 ~ 6627452 (-) True G103539
AMCG00010948 mRNA downstream 17160 5373859 ~ 5383129 (-) True AMCG00010948
AMCG00010945 mRNA downstream 44727 5353943 ~ 5355562 (-) True AMCG00010945
AMCG00010947 mRNA downstream 52922 5335846 ~ 5347367 (-) True AMCG00010947
AMCG00010946 mRNA downstream 74865 5291754 ~ 5325424 (-) False AMCG00010946
AMCG00010944 mRNA downstream 196658 5175899 ~ 5203631 (-) True AMCG00010944
AMCG00010950 mRNA upstream 4737 5415532 ~ 5431128 (-) True AMCG00010950
AMCG00010953 mRNA upstream 55538 5466333 ~ 5478561 (-) True AMCG00010953
AMCG00010952 mRNA upstream 71541 5482336 ~ 5489882 (-) True AMCG00010952
AMCG00010955 mRNA upstream 209500 5620295 ~ 5625529 (-) True AMCG00010955
AMCG00010954 mRNA upstream 233481 5644276 ~ 5653028 (-) True AMCG00010954
TU128994 other downstream 259833 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 750183 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1214315 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 1981113 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 2072730 3325858 ~ 3327559 (-) False AMCG00010895
TU129184 other upstream 293975 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2560829 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3408756 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3444110 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3823616 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00023961 False 747 mRNA 0.53 7 NC_007128.7 27338540 ~ 27382826 (-)