RNA id: AMCG00010954


Basic Information

Item Value
RNA id AMCG00010954
length 318
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00010954
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5644276 ~ 5653028 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgatgatgAAGGAGCTTCTTAAGGGCCTGGATTTCGTGTATAACTTTGTTGGGAGGATTCTGGGCCCACGAGGACTGACTGCCAAACAGCTGGAAGCAGAAACTGGATGCAAAATCATGGTCCGGGGAAAGAGCTCAATGAGGGACAGGAAGAAGGAAGAACAGAACCGGGGCAAGCCCAACTGGgagcatttaaatgaggatttgcACGTTCTGATCACGGTGGAAGACACACAGACCAGAGCAGAGATCAAGATGAGAAGAGCAGTGGAAGAGGTCAAGAAGCTTCTAGTGCCCGCGATAGGCTCTGAGAGATAA

Function

GO:

id name namespace
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0006397 mRNA processing biological_process
GO:0006417 regulation of translation biological_process
GO:0051028 mRNA transport biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0070935 3'-UTR-mediated mRNA stabilization biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017124 SH3 domain binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129136 lncRNA downstream 28423 5558677 ~ 5615853 (-) True G103362
TU129082 lncRNA downstream 266050 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 310019 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 352376 5284330 ~ 5291900 (-) True AMCG00010946
TU128990 lncRNA downstream 519989 5115715 ~ 5124287 (-) False AMCG00010937
TU129231 lncRNA upstream 313911 5966939 ~ 5974307 (-) False AMCG00010966
TU129292 lncRNA upstream 731453 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 860835 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 971053 6624081 ~ 6627452 (-) True G103539
TU129375 lncRNA upstream 975542 6628570 ~ 6628777 (-) False AMCG00010988
AMCG00010955 mRNA downstream 18747 5620295 ~ 5625529 (-) True AMCG00010955
AMCG00010952 mRNA downstream 154394 5482336 ~ 5489882 (-) True AMCG00010952
AMCG00010953 mRNA downstream 165715 5466333 ~ 5478561 (-) True AMCG00010953
AMCG00010950 mRNA downstream 213148 5415532 ~ 5431128 (-) True AMCG00010950
AMCG00010949 mRNA downstream 233481 5400289 ~ 5410795 (-) True AMCG00010949
AMCG00010958 mRNA upstream 1991 5655019 ~ 5673677 (-) True AMCG00010958
AMCG00010960 mRNA upstream 40416 5693444 ~ 5693785 (-) True AMCG00010960
AMCG00010961 mRNA upstream 52739 5705767 ~ 5717218 (-) True AMCG00010961
AMCG00010959 mRNA upstream 95355 5748383 ~ 5768274 (-) True AMCG00010959
AMCG00010965 mRNA upstream 252118 5905146 ~ 5924778 (-) True AMCG00010965
TU128994 other downstream 503820 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 994170 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1458302 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 2225100 3416368 ~ 3419176 (-) True G102990
TU128675 other downstream 2316717 3325858 ~ 3327559 (-) False AMCG00010895
TU129184 other upstream 51742 5704770 ~ 5748564 (-) True G103395
TU129762 other upstream 2318596 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 3166523 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 3201877 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3581383 9234411 ~ 9236193 (-) False AMCG00011058

Expression Profile