RNA id: AMCG00010956


Basic Information

Item Value
RNA id AMCG00010956
length 1392
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00010956
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5593933 ~ 5599868 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGCCTTTCTTCGGGGAATGACCCGAAAACAATGCTGGTCAAAACGGTATACTTCAAAAGGGCGTGGGCAGTCAGGCTACCCGAAAGAGAATTACACAGCAAGCCTCCTAACAGCCTCGCTGCCTCGAGACAAGAGCCCAGGACCggaggcagggaggcagggggCAGCGTGTGGACCGGCGCTGTTCAGAGCGGTGAGCGTGGTCTTGGCTACCGTCAGCAGGGTGTGCGATGAAGATATCTGGGCGTGGGATAATGGACTTGGAGCATCCCAGTCCCACTTCTACCACTACATTGTCACATTCTACTGGGCCATAACTACGATGACGACCACAGGGTTTGGTGATATTACGGCCAGCACTCCTTCAGAGCAGTTAGTGACCATCTTTAACAATCTCAGAGCCGTGACCCAATTAATGAAAAGCCACAAGCTCAGTCAGTCTCTGCAGGACAGGGTGATAGATTACATGAGCCTTCTTTGGGAGAAATACCAGGGGCAGGCATTCCCAGGCGGCCCTTTCCTGATGCACAACCTGCCTAGTAAGCTGCAGGAAGTCATCCTCATTATCCACAATGTACTTCTATCACAGAGGAGAGATCATATATACAAAGACTGCACTTGTAAAATCTTCTTCATCAAGGAGAGAACTTGTCAGATAAATTGTCATTTAAGATCTGACATTATGGGATTTCTACGCGCAGGAACATATTTTGGAGAGGGTGGGTTCTTATACAGGAAACCGGCACAAAGGATTGTGCATGCCCAATCAATGTGCCAGGTTATTGACTTTGACAGACTGAAACCAATTCTTGACAAACATCCAGTCACTAAAAGCCAATTCAAAAGACTGCAGGCAGAGTGTCTTCAGTCCTCTGAATGTGTATGGAGGAGAAAGGAACCGCAgataattaaaactgtaaaccTGTTTTGTGTTGGCCGCCAATTCCAAGAAAAGTACAAATGCTACGTTGAGGACTTCCGAATCTTCGAAATGTATGTGGGCAATGAAGAGGAGCATGTAGAGGCTCTCAGTCAGACTCAACCAGAGCTGTTCTTCTCTCATACCCTGCCACGAGCTTTCCTCATGCGGTGTGCTATAATACCCAATGGCTCACGTCTTTTCTGGTGGGTGTGTTTCTGTCTCCTCCTGGAGTTAATGATCTGCATGGTGTCTTCCCTCCTGTGGTCATTCCTGCACTTTCAACAAGACCTTTGGAAAGCCTTAGTCTTCCTGCTGATCGTCTGCTGGATTGACACATACATTCGGCTGCATGTGACGTTTTCTCGGGGCTCCAGGGTGGTAGTGGATACCATGGAAACAGCCAAGCAATACCTGAAGACCGCCTTCCTGATGGACTTCGTGAGGCGCATGCATGGAACTGATTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129094 lncRNA upstream 133360 5456358 ~ 5460573 (+) True G103333
TU129062 lncRNA upstream 238269 5353769 ~ 5355664 (+) True G103316
TU128991 lncRNA upstream 453212 5134227 ~ 5140721 (+) True G103258
TU128992 lncRNA upstream 453212 5134227 ~ 5140721 (+) False G103258
TU128860 lncRNA upstream 974277 4592744 ~ 4619656 (+) False G103152
TU129124 lncRNA downstream 17190 5617058 ~ 5652821 (+) True G103354
TU129125 lncRNA downstream 23890 5623758 ~ 5645621 (+) False G103354
TU129132 lncRNA downstream 69257 5669125 ~ 5694122 (+) True G103360
TU129213 lncRNA downstream 363221 5963089 ~ 5965939 (+) True G103413
TU129216 lncRNA downstream 363221 5963089 ~ 5965912 (+) False G103413
AMCG00010951 mRNA upstream 82251 5504377 ~ 5511682 (+) True AMCG00010951
AMCG00010942 mRNA upstream 309635 5283816 ~ 5284298 (+) True AMCG00010942
AMCG00010943 mRNA upstream 319801 5255095 ~ 5274132 (+) True AMCG00010943
AMCG00010935 mRNA upstream 424326 5166594 ~ 5169607 (+) True AMCG00010935
AMCG00010936 mRNA upstream 433489 5160010 ~ 5160444 (+) True AMCG00010936
AMCG00010957 mRNA downstream 51 5599919 ~ 5601213 (+) True AMCG00010957
AMCG00010962 mRNA downstream 334230 5934098 ~ 5939360 (+) True AMCG00010962
AMCG00010963 mRNA downstream 350558 5950426 ~ 5959972 (+) True AMCG00010963
AMCG00010967 mRNA downstream 377212 5977080 ~ 5977815 (+) True AMCG00010967
AMCG00010964 mRNA downstream 377982 5977850 ~ 5987680 (+) True AMCG00010964
TU128904 other upstream 951575 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 1510347 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 2013656 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 2150399 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 2165504 3426499 ~ 3428429 (+) False AMCG00010888
TU129373 other downstream 1042115 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 1317898 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 2948495 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 3930606 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 5218820 10818688 ~ 10819423 (+) True G104273

Expression Profile