RNA id: AMCG00010963


Basic Information

Item Value
RNA id AMCG00010963
length 2541
RNA type mRNA
GC content 0.45
exon number 8
gene id AMCG00010963
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5950426 ~ 5959972 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGAAGGGAGAAGCCAGCAGCAGCCGCGCTCAACTTCACATTTCAGCCAAGGATGCTTTAGCAAAAACCACTTCTGCAAACAGTCATCATTTCTTCTCTTCTAGATCACACAGTTGCGTGAATACTGGCTCAGAATTCAGAAAGAATGCAACAAATAAGAAAGTGTCCCATTCTTCTCCTTATTTTAATTCTTCCAGAAGGCACCTTCTCCGCCTCGAGTAACCCTCTGATAGTGATGGGGATGATTGGTGGTCAGGTCACCATTCCATGTACCAAGTACAAACAGGACACATCTTTCAGTAGTTCGTGCTGGTACTTAAATGGGACTGCAGTGTATTGCTCAGGATCTTCAATGGGAAGATTTGTTGGTCGAAGCCAGCAAATCCAGACTTGCAACCTGCTTCTCTCCAATCTTCAGGAAGGAGACTCAGGGCTGTTTACATATGTGTGGTCTTCCACTCATGTGGGGCAAGTGAATCTCATCTTAACTACAGaTCCTGCACTGGCAGGCTCCCCGCCTTATATCGAGGGCTTCAAAGGCAGATCCGCCATGTTGCCTTGCATTAACATGGGAAGTGGAGGGAGTCTCCCTAAAAACAACTGCTGGTATAGCAAAGAGGTTGACATCTTCTGCTTCTCTGGCCCTTCGCCCCGCTTTAACCAGTTCACATCTCGCATCAGAGGCAGGGACGACACTAATGTGGTACTCCCCGATTTGCAAGTGACAGATGCCGGGTTGTTCACTTGTTACTTGAGTTCTTCGACCCAAGGCACGGTGGCTCTGAAAGTGAAAGAGACTGCTGTTTCCAGACCTACTATAACGAGAAACCCGGATAAGCCTTACATCATGGCCGGAACTCCCATTACTCTAACCTGTCTTTCGGAAAATGGATCCTGGCCCATCTCGTACAGCTGGCGCAGACTCAACCCCCACAAGAGTAGCTACGACCTCATTAGCTCCCTCGCCTCTCTGTCATTTCCACAGGCTGAGGTAGGCGATGCAGGGACGTATGAATGTATCGCCACTAACGTGGTCAATGGAGCTTCCAGAACAGAGAAAGCCACAGCCCAGCTGATAGTGCAGAGCCCCATCACCAATCTCTCCATCTCGGTCATCCCCAagcagctgtttgtttttgaggGGCAGCTCATGGTCCTGCGGTGCCAGGTGGACTCGGGGTCAGAGCCCATCACCTGGACCTGGTACCAGCTCGAGGAGAAGGGGAGTGCAAGGAAGGCCATCATCAGCCAGGAGCAGGAGCTCAGGCTGACAGTCCCGGCGCAAAGCGGGCAGTACACATGCAAGGCACAAAACGAATATGACGGACAAAATATCACTCTAAACAGCAGGGAAGTGACAGTGCACATCATTCCCAAGGCTGAGGTGCATTCGATTGCCACGGTAagcctgtgtttctctgtgttcaTCCTGATCGGGCTCATGGTGGCAGGCTGCGTGTGGATGAGAAAGAAGAGCACAGACACTCGGACACCACCCACAAAAGATGTGTCAGCGGGCAAGCAAACTCCAAAAGACAAATATCACAAAAGCACTGAATACAAGACAGAGAATACCAGCAAAAATCATTACCAGGATGTTGAAGACGGATTTTACTGCCCTCTCTCTAACAGACAGATGGAAGAGGATGTTTATGATGATCTGTCTTAAAAGTCTTTATTTGGCTCCAATGATAGTTCAGCACAAGCAGTAGTCGCTGCATATGGCGTTAAATTAAACCACTTCAAACTGTTATTGTGATCATGAaagaaacaactaaacaaaataacaacagatTAAAATTTGTACTGGACTGTAATAAAGCACATGCCGTTTCACGCAACCAAAAATAATGGGGCTGGATGTATTCaggcctgtttgtttgttactaTTTGTATGATATTatacagcattttgtttctgtttaccTCTCTTTCTGTTGCAAACAGATGTTTTCCCAGAAAGCACCAGAATTACAAACTAACTTACAGGGCTGTTTCAAAGTAGCAaatccacacaaacaaatacaccgTAAATCCTCCCTTCTGGCGATACTTGTGTTGAAGAGATGAAACAATCGAAGCCAAAAATATTGCAGTCAAATGATAAACGGGAAAAAACAAGtgctgaataaatgaatgaattggATAATTGCAAGGCGCTGTGAATTAACGTCGGGAACCCAAATCAAACGCATCATTCTCACAAACGTGGAGGGTACGCCAACACCAGTGGAAACGTCTATACTTCAGTCGGCTCCTGTTCAGAGAAACATGTATAGTTTTTATCAATGGAGCAGGTTTATGTCCtccatgtgttttgtttgcttttcatttggtTCTGGGTACTTTTGTCATCATCTTTCCccctatatatttgtattgatagCCTAGTATGTAAATCCTCCTGAGAGAATCGCAGAATTGTGCAGCGTACCCGTATTTTATGTACATCCCTGGCTATTCttgtaaaaaagtaatttgattcTGTGATGTGTATGACCATAATGTTCCAAatgttcataaaaaatataaattctgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129132 lncRNA upstream 256304 5669125 ~ 5694122 (+) True G103360
TU129124 lncRNA upstream 297605 5617058 ~ 5652821 (+) True G103354
TU129125 lncRNA upstream 304805 5623758 ~ 5645621 (+) False G103354
TU129117 lncRNA upstream 336992 5550058 ~ 5613434 (+) True G103348
TU129094 lncRNA upstream 489853 5456358 ~ 5460573 (+) True G103333
TU129213 lncRNA downstream 3117 5963089 ~ 5965939 (+) True G103413
TU129216 lncRNA downstream 3117 5963089 ~ 5965912 (+) False G103413
TU129220 lncRNA downstream 7545 5967517 ~ 5990587 (+) True G103416
TU129236 lncRNA downstream 66988 6026960 ~ 6029057 (+) True G103431
TU129273 lncRNA downstream 193021 6152993 ~ 6153266 (+) True G103459
AMCG00010962 mRNA upstream 11066 5934098 ~ 5939360 (+) True AMCG00010962
AMCG00010957 mRNA upstream 349213 5599919 ~ 5601213 (+) True AMCG00010957
AMCG00010956 mRNA upstream 350558 5593933 ~ 5599868 (+) True AMCG00010956
AMCG00010951 mRNA upstream 438744 5504377 ~ 5511682 (+) True AMCG00010951
AMCG00010942 mRNA upstream 666128 5283816 ~ 5284298 (+) True AMCG00010942
AMCG00010967 mRNA downstream 17108 5977080 ~ 5977815 (+) True AMCG00010967
AMCG00010964 mRNA downstream 17878 5977850 ~ 5987680 (+) True AMCG00010964
AMCG00010969 mRNA downstream 75519 6035491 ~ 6051667 (+) True AMCG00010969
AMCG00010979 mRNA downstream 427064 6387036 ~ 6395484 (+) False AMCG00010979
AMCG00010974 mRNA downstream 448946 6408918 ~ 6411796 (+) True AMCG00010974
TU128904 other upstream 1308068 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 1866840 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 2370149 3577235 ~ 3580277 (+) True G103030
TU128618 other upstream 2506892 3436618 ~ 3443534 (+) True G102947
TU128592 other upstream 2521997 3426499 ~ 3428429 (+) False AMCG00010888
TU129373 other downstream 682011 6641983 ~ 6642628 (+) True G103542
TU129402 other downstream 957794 6917766 ~ 6920931 (+) False AMCG00010990
TU129898 other downstream 2588391 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 3570502 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 4858716 10818688 ~ 10819423 (+) True G104273

Expression Profile