RNA id: TU129231


Basic Information

Item Value
RNA id TU129231
length 633
lncRNA type sense_over
GC content 0.47
exon number 6
gene id AMCG00010966
representative False

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5965133 ~ 5974307 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatGCTAATATAGAGACCTTTGTAACTTGGCATTCCCTGAGACTGAAACAGGAACTGTTTGATGAGGTGTGCCTTGTTTATCTATGAGTTCAGCAGCTGTTGATGGTGATGGTGGGAGGGGACAGCAGCGCTGGAGCTCATTGTGCGCCGGCGGAGCGCAGAGACGGTGCGCCACTGATGGGACAGAGGATGCCAtgACTAAGTGATTGAGAAAATTTCCTTTTTGACAAATCTCTTCTCAACATCTGCCCGTGTGGATTCTCTTTGCTTCATGATTTCCTGTCTTAGTCTGAACTGAAGGCAGCTTTTTCCTGGAATTCCTGCAGTGGAGGATCGTGCTGGGACTTGAGTGGCCTGGGaacCAGACCTTTACTCAAGAGACATGACTTGCAATACCTCCAACGGGATAAATTTGACCAGTCTGGTGGACTCCCAATTCAGGTACATCCTCTTCCCAGTAGTTTACAGCCTGGTCTTTGTTGTGGGGCTGATTGCCAACTGCTATGTCCTCTGGGTCTTCAAGCAGATGTTTAAAAGCGAAGGCGTGAACGAAATCAAGATTTACATGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129136 lncRNA downstream 351086 5558677 ~ 5615853 (-) True G103362
TU129082 lncRNA downstream 588713 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 632682 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 675039 5284330 ~ 5291900 (-) True AMCG00010946
TU128989 lncRNA downstream 837798 5115715 ~ 5129141 (-) True AMCG00010937
TU129292 lncRNA upstream 410174 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 539556 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 649774 6624081 ~ 6627452 (-) True G103539
TU129375 lncRNA upstream 654263 6628570 ~ 6628777 (-) False AMCG00010988
TU129387 lncRNA upstream 780986 6755293 ~ 6762139 (-) True G103556
AMCG00010965 mRNA downstream 42161 5905146 ~ 5924778 (-) True AMCG00010965
AMCG00010959 mRNA downstream 198665 5748383 ~ 5768274 (-) True AMCG00010959
AMCG00010961 mRNA downstream 249721 5705767 ~ 5717218 (-) True AMCG00010961
AMCG00010960 mRNA downstream 273154 5693444 ~ 5693785 (-) True AMCG00010960
AMCG00010958 mRNA downstream 293262 5655019 ~ 5673677 (-) True AMCG00010958
AMCG00010968 mRNA upstream 3615 5977922 ~ 5989279 (-) True AMCG00010968
AMCG00010971 mRNA upstream 29656 6003963 ~ 6014817 (-) True AMCG00010971
AMCG00010972 mRNA upstream 54573 6028880 ~ 6032424 (-) True AMCG00010972
AMCG00010970 mRNA upstream 100304 6074611 ~ 6077628 (-) True AMCG00010970
AMCG00010973 mRNA upstream 198501 6172808 ~ 6173935 (-) True AMCG00010973
TU129184 other downstream 218375 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 826483 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 1316833 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1780965 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 2547763 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 1997317 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 2845244 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 2880598 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3260104 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 3627577 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile