RNA id: AMCG00010968


Basic Information

Item Value
RNA id AMCG00010968
length 927
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00010968
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 5977922 ~ 5989279 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCTTGCAACTTCTCTAACGCTACAAATGGGACAGGTCTGGTGGACTCCCCATTCAGGTACATCCTCTTCCCAGTCGTTTACAGCCTGGTTTTTGTTGTGGGGCTGATTGCCAACTGCTATGTCCTCTGGGTTTTCAAGCAGATGTTTAAAAGCGAAGGCGTGAACGAAATCAAGATTTACATGATCAACCTGGTCGTGGCGGACTTGCTGTTTGTTGCTGCCCTGCCGTTGTGGATTGTCTATTACATTAAGGAAGGGAACTGCTTCAACCGCTGCAGGGCCGTGACGAAGCCATTGGAGACTGTCAAGTCTACTGAGAACAAACGAGGCATAGTGGTGTCAGCCACCATCTGGATCCTAACCCTGGCGTCTGCATTCCCTTCTCTTTTCGATGACCACCTCAACAGTGATGGCGAGTTATGCCGCTGTTTTGAGGGCTACCACTACCAAGATGAGTCAGCAAAGAAAAAAGTGGCCGTCCTCAATTTCGTGGTAATTGGCATGTTCTTCTGCGTTTTCCTCCTGGTGGTGGTCTGCAACCTCCTCATCATCCGCACTCTGCTCTCCCAGACGGTGAAACAGCAGGGAAGCCGGAAGAGAGGGGTCAAGCAGAGAGCCTTGTGGATGGTGTGCGCGGTGCTGGTGGTCTTTGTCGTCTGCTTCATCCCCCACCACATCGTCCAGGGGCCCTGGACACTGGCTGTCCTGTGGGGCAATGATAAGGCCCTCAATGATGCACACCAGATTACTCTTTGTCTGATGGGCCTCAACTGCATCCTAGACCCCATTGTCTACTGCTTTGCCACCAGGAAATTCCAAAGCTACTTCTTGTCCCGGCTGAAGATATTAAATGGCAGCCGCAAGTGCTCCAGCTTTCTCCTCTCTGCTGTCTTCCTCACTGCTGCCTCCAGACTCAAGGAGTGA

Function

GO: NA

KEGG:

id description
K04279 PTAFR; platelet-activating factor receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129231 lncRNA downstream 3615 5966939 ~ 5974307 (-) False AMCG00010966
TU129136 lncRNA downstream 362069 5558677 ~ 5615853 (-) True G103362
TU129082 lncRNA downstream 599696 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 643665 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 686022 5284330 ~ 5291900 (-) True AMCG00010946
TU129292 lncRNA upstream 395202 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 524584 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 634802 6624081 ~ 6627452 (-) True G103539
TU129375 lncRNA upstream 639291 6628570 ~ 6628777 (-) False AMCG00010988
TU129387 lncRNA upstream 766014 6755293 ~ 6762139 (-) True G103556
AMCG00010966 mRNA downstream 8956 5965133 ~ 5968966 (-) True AMCG00010966
AMCG00010965 mRNA downstream 53144 5905146 ~ 5924778 (-) True AMCG00010965
AMCG00010959 mRNA downstream 209648 5748383 ~ 5768274 (-) True AMCG00010959
AMCG00010961 mRNA downstream 260704 5705767 ~ 5717218 (-) True AMCG00010961
AMCG00010960 mRNA downstream 284137 5693444 ~ 5693785 (-) True AMCG00010960
AMCG00010971 mRNA upstream 14684 6003963 ~ 6014817 (-) True AMCG00010971
AMCG00010972 mRNA upstream 39601 6028880 ~ 6032424 (-) True AMCG00010972
AMCG00010970 mRNA upstream 85332 6074611 ~ 6077628 (-) True AMCG00010970
AMCG00010973 mRNA upstream 183529 6172808 ~ 6173935 (-) True AMCG00010973
AMCG00010975 mRNA upstream 404421 6393700 ~ 6398157 (-) True AMCG00010975
TU129184 other downstream 229358 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 837466 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 1327816 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1791948 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 2558746 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 1982345 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 2830272 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 2865626 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3245132 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 3612605 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile