RNA id: AMCG00010970


Basic Information

Item Value
RNA id AMCG00010970
length 3018
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00010970
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6074611 ~ 6077628 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGATGTTACAAGTTACAAAGACACCACTAACCGCCACCTGCGGCACAAGCTGCAGAGCCTGGGCCGGCGGCTGGAcgagctggaggaggccaccAAGAACCTGCAGAAAGCTGAGGATGAGCTCCTGGACCTGCAGGACAAGATCATGCAGGCTGAGGGCAGCAGCTCCTCCCTGCTCAACGATGTGGACACATTACGCAAGCGAGTGCTGAAGATTGAGGGCAAGGATGAGGAGGTGCGCAAGGCCGAGGACCTCTGCAGGCTGGTCCGGGAGaagctggaggaagaggagaagctGACCAAAGAGCTGAAGTCTGAAACTGAGCATCTGCAGAGTAGGATGGCCGAGCTGGAGAAGCTCGAGGAGGCCTTTAGCAAGAGCAAGTCTGACTGCACGCAGCTCTGCCTCAGCCTGAATGAGGAGAAGAACCTGACCAAGAAGCTTTCATCTGAGTTGGAGACCCTGAAAGCCAGACTGAAGGAGATGGACTCCTCGGAGAGCCGACtggacagagcagagcagaccTTGAATGCAGAACTGGAAAAGCTCAAGACCCTGGCAGTGAGCTTTGTCAATGAGCGGAAAAGGCTGCTGGAGAAGCAGAAGGAAGATGAACAATTAATCCAAGAGCTGACCCAGAAACTTGAGCACAACAACAAGATCAACACTGCAGACCAGAGTAGGAATGCCTCCAACCTTCTGGAGCGCTCTTCTGAGACTGGGGACCTCCGTATTGAGGATGAGCTGTCTCCTGGTTTGACCAGCAAACTTGGCATAAGGAAAAAGAGCTTGGATTTTCTGAAGCTGACTGACGACATAGGCCTAAGAAGCAAATCAGAGAATGAAAAGAACAGTACAGACGGTCAGGAAGATAATAAAGTAAAGGATCTCAACCAGGAGATAGAGAGGCTCAAAAACCGCTTGAAGCAGTTGGAACTGATGGAGGAGGACTTCAAGAACACTGAAGCCAAGAATGGAGAGCTGCAGGAAAAGTTCCTGCAAGAGAGAAATCGGAGTAAAGTGCTTAGTGACCAGGTGGAGCAGCTGAAGCTGCAGCTTGGCAGTACCAAAATCCTTGAGAATGGCAAAGCCGAAAATGAGGAGATTAATGTCCGGGGCGGTTTCAGACAGGAGAAGCCCAAGTACAGGAGTGTGGCTGCTGAACCACCTATTTCCAACTACAAACCACGTGAGCTCTCTCCTCAGCAGAGGCGGGAAGCAAAGATAAGGAACAATAATCTGAATCAGTCAGGTGAAAGCTCTCCTAAATCTGTCAGGAGGGCTCTCAGTCCAGGAGTAAAGGGCAGAAGAGTTGGGAGACCTGGTGATATTGCAGTAAGGGAAAGAGGAAGGGCAGTAGAACCAGCAACCAGTTATATGTCAACAAGCACATCCCTCAGTGAAGGaaagaaagtaaagaaaacaagGGAGCAACCCTCTGTTCTCAGTCGCTATCCTCCCGCTGCTAATGACCAGAGTGTCCAAAAGTCCTGGAAAGAGTCTTTGAAGTCTAGTGAAAATGAGggtaagaaaaaacaaactgagagGTTTTCTAAGTTGTACACTGGCAGCGACAGTGAATCCAACAACTCAGATGTGCCTTTGGAAATCTCAAGTAAGACTTCCAGTGTACTACCCCCCGAAAAGGAGATGTTCAACTCGGAACCCTTGGATCACCTGGAGGAGACCCTAGTGACAACCTATATGTCGGCAAAGCCTAACGGATCGATTTCTAGCTATAGGTCCCCTGTGTCTGCTTTGGCACAACTTGAGCATGGGTCAGAGAGCCCTTCTTCGGCCTCAGAGACTGAATCTACAGGATCCAGGCGCTCACTAGGAGAAACGGAACCTGTTCCCGAGGTCACTGCATTGAGTGGCAGGTCTGCTGTTTCAAAGCACCACAGATATTCCCGGTTGCAAGATTCCCACTCAGAAGCTTCATCCACTCGAAGTTCCTTTGAAGAAGAGGCACCTAAACCTCTAGGCAGGGAAGGTAGTTTATCAGAGGCCACCCACACACCCTCAGGCATCGAAATCCGCAGAGTCTGCAGCCCCAGGGAGGCCCTGCGATCCAAAGCTGTCATTAAGCCAGCCATCGTGGAGATCGACCGTAAAGAGGTGATGTCCGGCACGGGGGTAGAGCCTTTGCCCTCTGACGGCAAGCCCAAGATCTCCACCAAACCCATCTTGAACAAGATGACCAGTAGCATCACAATTTACCCCAGTGACCCCACCTCTTCAAGGGCCAGCAGCCGCAGCCggagcagtagcagcagcagtgagctgTCCAGGGAACGTCATACTTCCACCAGCAACATAGTGATTACCCCCACCACTGAGCACCGCAACAGTGTGTCCATCCCCTATGAAATCTCCATCCCTAAGAGTGAGATCTCATGCAAGCCTTCCCTGGATGCTGAGGAGCCTGAGCCACTGGTGGAGGTGAAGACGGAGACTCGGCTCTCCAGGAGCAGTTTCACCATAAAGCCCCCAGAGCCGGAGCTGAACAGCAACAAGAATGACGAGTCTGGATTTGAGAGTGGCGGTGGAGGTGGCACCACTACCACTACTACAACAGTCACCAGCTGGAGGAACCAACAGTCCAAGGAAGATGCCGGTGTGGACTTGAAGAATGTGACCGTGAGGAGCACGTGGAGGAACAAGCAAGGCCTTGTGGAAGAGAATCGAGGTCCCAGGATAGATGCCCCAGAGGAGGAGACTGAATCTTCCAGCACCTGGAGGGCTTACCGGGCCACTGCGGTCCTGGACTCGGAGGAGACCTCCCGTAGCTCAAAGCCCAGCCCCGCTGAGGTATACATGCGCAGGATACACAGTGTGGTGACGGCCCGGGAACCCCCAGAGCCAGTTCGTAGGAGCCAAAGCACCATGAGCGTGTTGGACAGCGTCATTGAGAGGACCCAGCCCCACGAGCCCGTCATCGCTCAGGAACTGATATCCTGGAAACGCATCAAATCCCCAGTAAGTACATGGAGCAAAGATTGCATACTTTGA

Function

GO:

id name namespace
GO:0046578 regulation of Ras protein signal transduction biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007265 Ras protein signal transduction biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:1902531 regulation of intracellular signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129231 lncRNA downstream 100304 5966939 ~ 5974307 (-) False AMCG00010966
TU129136 lncRNA downstream 458758 5558677 ~ 5615853 (-) True G103362
TU129082 lncRNA downstream 696385 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 740354 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 782711 5284330 ~ 5291900 (-) True AMCG00010946
TU129292 lncRNA upstream 306853 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 436235 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 546453 6624081 ~ 6627452 (-) True G103539
TU129375 lncRNA upstream 550942 6628570 ~ 6628777 (-) False AMCG00010988
TU129387 lncRNA upstream 677665 6755293 ~ 6762139 (-) True G103556
AMCG00010972 mRNA downstream 42187 6028880 ~ 6032424 (-) True AMCG00010972
AMCG00010971 mRNA downstream 59794 6003963 ~ 6014817 (-) True AMCG00010971
AMCG00010968 mRNA downstream 85332 5977922 ~ 5989279 (-) True AMCG00010968
AMCG00010966 mRNA downstream 105645 5965133 ~ 5968966 (-) True AMCG00010966
AMCG00010965 mRNA downstream 149833 5905146 ~ 5924778 (-) True AMCG00010965
AMCG00010973 mRNA upstream 95180 6172808 ~ 6173935 (-) True AMCG00010973
AMCG00010975 mRNA upstream 316072 6393700 ~ 6398157 (-) True AMCG00010975
AMCG00010978 mRNA upstream 322998 6400626 ~ 6404255 (-) True AMCG00010978
AMCG00010980 mRNA upstream 336511 6414139 ~ 6415012 (-) True AMCG00010980
AMCG00010976 mRNA upstream 341754 6419382 ~ 6422777 (-) True AMCG00010976
TU129184 other downstream 326047 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 934155 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 1424505 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1888637 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 2655435 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 1893996 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 2741923 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 2777277 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3156783 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 3524256 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile