RNA id: AMCG00010971


Basic Information

Item Value
RNA id AMCG00010971
length 1960
RNA type mRNA
GC content 0.40
exon number 10
gene id AMCG00010971
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6003963 ~ 6014817 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCCACAGTCACGTGTCAGAGGGCACACCACGTGATATGTGGTTGAGCCAAGATGGCGGCTGCAGGGGGAGAGCCGGGCACTGCTACTGATGTTGGAGACGAAGCTTTCCAGGTTTTTTACACGGAGGTGAAGCAGATTGAAAAGAGAGACTCTGTTTTAACCCCCAAACAACAGATTGAAAGATTAACCAGGCCAGGggcttcatattttaatttgaacccTTTTGAAGTCTTGCAGCTGGATCCAGAAATAACAGATGATGAAATCAAGAAAAGGTTTCGCCAGCTCTCAATCCTGGTCCATCCTGACAAAAACCAAGATGATCCAGAAAGGGCCCAGAAAGCCTTTGAAGCTGTTGATAAAGCCtacaagctgctcctggattcgGAGCAGAAGAAGAGGGCCGTTGATGTGATTCACGCAGGCAAGGAGTACGTGGAGCACACGatgaaagagaagaagaagcagCTGAAGAAGGAAGGAAAACCGACTGTAGTGGAGGAGGATGACCCAGAATTGTTCAGGCAGGCGGTGTATAAGCAGACGATGAAATTGTTTGCAGAACTGGAGATcaagaggaaggagagggaggccaaGGACATGCATGAGAGgaaacGACAACGGGAGGAGGAAATTGAAGCGCAGGAGAAAGCCAAACGGGAGAGGGAGTGGCAGAAAAACTTTGAGGAAACGAGGGATGGCCGCGTGGACAGCTGGCGGACCTTCCAAGCCAAAGGCAAGACtaagaaagagaagaagaatCGCTCTTTTCTCAAGCCACCGAAAGTGAAGATGGAGCAGCGATAAGCAGAatCTATATTTATAATCCCCGGCCCCTCCTGAGGAGAACTTCACCGTGTACAGATTAGACTAACTATtcatttgggattttttttttaatataacctCAGATACAATCTCTGTTAAAAAATTAGGATTATTTTTGTAGTGCTATTAGTGTAGACTTTCCTCAAATTCAGCTGTaaatatttccaacagtataCGTAATTGGAAGTGTCCAATTCATACAACACTTCCTTCTAGTTCTTTGAAATACCCTGCATCTCCTGATCTCAATAATAATCCATGTTTCagacctacatttttttttttcccccaataaaGCAAGCCTCACGTTTTAGGTGACACCcttgtggagagagagaaaaaataccttcagcatttctttaattataaaacaaggACATAAGTCTTCAACCTCATGCATAACCTTAAACAAACGCACACAGTCATTGTTAAAATAAGGTCAGATATTTTAGATTTGAAGGTGTTAACTTTTAATTGTGTAGATTTGTGTGTATAAATTACCATTGCATTTCTTCCACATTACTGTACATCTGTAGGTGCTTTTAATGCCGTAAATACAGTGGCATTCAAATGATTCCATGCAGTGAAATTATTCtgcaaaatcaaatcaattatgCTATTTTACAGCTTTTTATGTCCTTGTTTTAAAACCACACTTAAGCTGGTATCATGAAATTGTCTATTTGTTAAATACTGAAAGACCAATCATATCTCTTTTTGCAATATGCATACAGTCCTCAGTGTTTAAATTCTGGCTATACTTTTATACTCCTACCCACCCCTCCTCTGTAAAAATATCCTATGTATTCTTCGTTAAGAGAAAAGGTGAGATGGGGAACAAAAATTACCTTTTCACTTAGATCACCAGACGTTTAGTTTGTGAGATTGTTCATTTAAAGAGACTCTTGCATTGCATTTTGCTGTACTAGGTGATTTACagaagtgtcttttttttttttttttttgtattgtaatgtcGGCAGAGGATTCTGTAACATCTCAATTAAATCGAATGTTGAAAACGTCATTTCATAATTTGGTTGTACTGTTTCGTGCTTTGGTGTGCAATGATGCTGTTCTTTCAGTGCATGTGAGCAAACTAAAGGTGGATTAAACCCTTGGTGGCACATTT

Function

GO: NA

KEGG:

id description
K09528 DNAJC8; DnaJ homolog subfamily C member 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129231 lncRNA downstream 29656 5966939 ~ 5974307 (-) False AMCG00010966
TU129136 lncRNA downstream 388110 5558677 ~ 5615853 (-) True G103362
TU129082 lncRNA downstream 625737 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 669706 5331732 ~ 5334257 (-) True G103309
TU129052 lncRNA downstream 712063 5284330 ~ 5291900 (-) True AMCG00010946
TU129292 lncRNA upstream 369664 6384481 ~ 6386604 (-) True G103473
TU129331 lncRNA upstream 499046 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 609264 6624081 ~ 6627452 (-) True G103539
TU129375 lncRNA upstream 613753 6628570 ~ 6628777 (-) False AMCG00010988
TU129387 lncRNA upstream 740476 6755293 ~ 6762139 (-) True G103556
AMCG00010968 mRNA downstream 14684 5977922 ~ 5989279 (-) True AMCG00010968
AMCG00010966 mRNA downstream 34997 5965133 ~ 5968966 (-) True AMCG00010966
AMCG00010965 mRNA downstream 79185 5905146 ~ 5924778 (-) True AMCG00010965
AMCG00010959 mRNA downstream 235689 5748383 ~ 5768274 (-) True AMCG00010959
AMCG00010961 mRNA downstream 286745 5705767 ~ 5717218 (-) True AMCG00010961
AMCG00010972 mRNA upstream 14063 6028880 ~ 6032424 (-) True AMCG00010972
AMCG00010970 mRNA upstream 59794 6074611 ~ 6077628 (-) True AMCG00010970
AMCG00010973 mRNA upstream 157991 6172808 ~ 6173935 (-) True AMCG00010973
AMCG00010975 mRNA upstream 378883 6393700 ~ 6398157 (-) True AMCG00010975
AMCG00010978 mRNA upstream 385809 6400626 ~ 6404255 (-) True AMCG00010978
TU129184 other downstream 255399 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 863507 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 1353857 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 1817989 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 2584787 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 1956807 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 2804734 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 2840088 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 3219594 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 3587067 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00028504 False 955 mRNA 0.53 9 NC_007130.7 69238 ~ 72398 (-)
grasscarp (Ctenopharyngodon idella) CI01000117_00674637_00677873.mRNA True 1312 mRNA 0.45 8 CI01000117 674106 ~ 678021 (+)