RNA id: AMCG00010975


Basic Information

Item Value
RNA id AMCG00010975
length 1893
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00010975
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6393700 ~ 6398157 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCTGAGGTGAACGGCAATTCCACTCAGGTTAAGGAGGAGGAAGAACCCATGGACACCTCAAATGTAACTCATACAGAAAATTACCAGACTTTGATAGACGCTGGTCTGCCACAGAAAGTAGCAGAACGACTGGATAACATTTTTCAGACAGGTTTGGTGGCATATGCTGATCTTGATGAGAGGGCCATTGATGCTTTGAGAGAGTTCAATGAAGAAGGCGCTCTGTCTGTTCTACAGCAGTTTAAAGAGAGTGACTTGTCTCATGTACAGAACAAAAGCGCATTTTTATGTGGAGTAATGAAAACCTACAGACAGCGGGAGAAGCAAGGAAGCAAGGTACAAGAATCAACGAAGGGGCCTGATGAGTCCAAGATTAAGGCTCTGCTGGAGAGGACAGGGTATACTCTAGATGTGACCACAGGGCAAAGGAAGTACGGGGGGCCGCCTCCTGAAGAAGTTTACTCCGGGGCTCAGCCAGGAGTGGGAACAGAGGTGTTTGTTGGGAAAATCCCAAGAGATTTGTACGAGGATGAACTGGTTCCCCTCTTTGAGAAAGCGGGTCCGATATGGGATCTGCGGTTGATGATGGACCCTTTATCCGGTCAGAACAGAGGATATGCATTTATCACTTTCTGCAACAAAGAGGCGGCGCAGGAGGCAGTTAAACTTTGTGATAACTATGAAATCCGGTCTGGTAAATACCTTGGTGTCTGCATCTCTGTTGCAAACAATCGGCTGTTTGTTGGATCAATTCCAAAGAACAAGACCAGGGAAAGCATCTTGGAAGATTTCAGCAAAGTCACAGAGGGTCTTATGGAAGTGATCCTATACCATCAACCTgatgataaaaagaaaaacaggggATTCTGTTTCCTGGAGTACGAGGACCACAAATCTGCTGCCCAGGCACGGCGCAGGCTGATGAGTGGCAAGGTCAAAGTGTGGGGCAACCCGGTCACTGTAGAGTGGGCTGACCCCGTGGAGGAGCCTGACCCGGAGGTCATGGCAAAGGTGAAGGTCTTGTTTGTGAGAAACCTTGCCACCCCGGTCACCGAGGAGCTCCTGGAGAAGACTTTCTCTCAGTTTGGAAAGTTGGAACGAGTAAAAAAGCTTAAAGACTatgcttttgttcattttgaagaTAGGGATGCAGCAGTGAAGGCAATGCaagaaatgaatggaaaagAGCTTGAAGGAGAAGAGATTGAAATTGTTCTGGCAAAGCCCCCTGATAAGAAACGGAAAGAACGTCAAGCTGCTAGACAGACCACCAGAAACCCAGGGtatgatgattattactattaccCCCCTCCACGAATGCCCCCACCTGTTCGAGGCAGAGGTCGTGGAGGCCGAGGCGGATATGTGTATCCCCCAGACTACTACAGCTATGACGAGTACTATGACGATTACTATGGCTATGATTACCATGACTATCGAGGTGGCTACGAAGATCCCTACTATGGCTACGATGATGGCTATGCTATGAGAGGAAGAGGCAGCCGAGTCAGCAGAGGCGCCCCTCCTCCAAGGGGCAGAGGAGCGCCCCCCCCCAGAGGAAGAGTTGGCTACTCGCAGCGGGGCGCGCCCATGGGGGCGCCGAGGGGCACTCGAGGCGGCAGAGGGGGCCCTTCCCAGCAGCAGAGGGGCCGCGGGGCCCGGGGATCCAGAGGAAATCGTGGTGGAAATGTGGGCGGGAAGAGGAAGGCAGATGGGTACAACCAGCCGGATTCCAAGCGCCGCCAGACCAACAACCAGCAGAATTGGGGCTCCCAACCCATCgcccagcagcctctgcagCAGGGTGGCGACTATTCCGGTAACTATGGTTACAATAATGACAACCAGGAGTTTTATCAGGATTCTTATGGGCAGCAGTGGAAGTAG

Function

GO: NA

KEGG:

id description
K13161 HNRNPR; heterogeneous nuclear ribonucleoprotein R

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129292 lncRNA downstream 7096 6384481 ~ 6386604 (-) True G103473
TU129231 lncRNA downstream 419393 5966939 ~ 5974307 (-) False AMCG00010966
TU129136 lncRNA downstream 777847 5558677 ~ 5615853 (-) True G103362
TU129082 lncRNA downstream 1015474 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 1059443 5331732 ~ 5334257 (-) True G103309
TU129331 lncRNA upstream 115706 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 225924 6624081 ~ 6627452 (-) True G103539
TU129375 lncRNA upstream 230413 6628570 ~ 6628777 (-) False AMCG00010988
TU129387 lncRNA upstream 357136 6755293 ~ 6762139 (-) True G103556
TU129388 lncRNA upstream 361982 6760139 ~ 6762139 (-) False G103556
AMCG00010973 mRNA downstream 219765 6172808 ~ 6173935 (-) True AMCG00010973
AMCG00010970 mRNA downstream 316072 6074611 ~ 6077628 (-) True AMCG00010970
AMCG00010972 mRNA downstream 361276 6028880 ~ 6032424 (-) True AMCG00010972
AMCG00010971 mRNA downstream 378883 6003963 ~ 6014817 (-) True AMCG00010971
AMCG00010968 mRNA downstream 404421 5977922 ~ 5989279 (-) True AMCG00010968
AMCG00010978 mRNA upstream 2469 6400626 ~ 6404255 (-) True AMCG00010978
AMCG00010980 mRNA upstream 15982 6414139 ~ 6415012 (-) True AMCG00010980
AMCG00010976 mRNA upstream 21225 6419382 ~ 6422777 (-) True AMCG00010976
AMCG00010977 mRNA upstream 25409 6423566 ~ 6442741 (-) True AMCG00010977
AMCG00010984 mRNA upstream 77825 6475982 ~ 6509923 (-) True AMCG00010984
TU129184 other downstream 645136 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 1253244 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 1743594 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 2207726 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 2974524 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 1573467 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 2421394 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 2456748 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 2836254 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 3203727 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile