RNA id: AMCG00010978


Basic Information

Item Value
RNA id AMCG00010978
length 767
RNA type mRNA
GC content 0.52
exon number 8
gene id AMCG00010978
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6400626 ~ 6404255 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGACCGGTTCAATAAGtttattttgctcTACTGCAGTAAAATGGACGCAGACGTGGCTTTACAGTACCCAGTGGTGTTGATCTCTGGCCTCATGGCCTCAGCACTGCAGGTTCTGCTACTTGATGGCAGAGGGCATCTCCTCGGCCGCCTGGCTGCCATTGTGGCGAAGCAGGTTCTGCTTGGACACAAAGTGGTTGTTGTGAGATGTGAAGGGATCAATATCTCCGGAAACTTCTACCGCAACAAATTGAAGTACCTTGCCTTCCTGCGCAAGAGGATGAACACCAACCCCTCCCGTGGGCCCTACCATTTCAGAGCCCCCAGCCGCATCTTCTGGAGGACTGTCCGAGGTATGCttccacacaaaacaaagagagGTCAGGCTGCCTTGGAGAGGCTGAAGGTCTTTGATGGGATCCCCCCTCCCTATGACAAAAGGAAGCGTATGGTGGTGCCAGCGGCTCTGAAGATTGTGCGCCTGAAGCCCAGTCGCAAGTTTGCCCTGCTTGGCCGCCTTGCCCATGAGGTTGGTTGGAAGTACCAGGCCATCACAGCCACCCTGGAGGAGAAGCGGAAGGAGAAGTCCAAGGTCCGCTATGGCAAAAAGAAGACTGAGCTGAAGCTTAAGAAGGTGGCAGAAAAGAACGTGGAGAGCAAAATCGCCAAATACACTGAAGTCCTCAAACAATATGGGGTTCTTGTTTAAGCTGGCATTCTCGagtcaaataaatgtttatatacagtaccaGAGTCCTCCAGATt

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0015934 large ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02872 RP-L13Ae, RPL13A; large subunit ribosomal protein L13Ae

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129292 lncRNA downstream 14022 6384481 ~ 6386604 (-) True G103473
TU129231 lncRNA downstream 426319 5966939 ~ 5974307 (-) False AMCG00010966
TU129136 lncRNA downstream 784773 5558677 ~ 5615853 (-) True G103362
TU129082 lncRNA downstream 1022400 5359975 ~ 5378226 (-) True G103329
TU129054 lncRNA downstream 1066369 5331732 ~ 5334257 (-) True G103309
TU129331 lncRNA upstream 109608 6513863 ~ 6514123 (-) True G103503
TU129370 lncRNA upstream 219826 6624081 ~ 6627452 (-) True G103539
TU129375 lncRNA upstream 224315 6628570 ~ 6628777 (-) False AMCG00010988
TU129387 lncRNA upstream 351038 6755293 ~ 6762139 (-) True G103556
TU129388 lncRNA upstream 355884 6760139 ~ 6762139 (-) False G103556
AMCG00010975 mRNA downstream 2469 6393700 ~ 6398157 (-) True AMCG00010975
AMCG00010973 mRNA downstream 226691 6172808 ~ 6173935 (-) True AMCG00010973
AMCG00010970 mRNA downstream 322998 6074611 ~ 6077628 (-) True AMCG00010970
AMCG00010972 mRNA downstream 368202 6028880 ~ 6032424 (-) True AMCG00010972
AMCG00010971 mRNA downstream 385809 6003963 ~ 6014817 (-) True AMCG00010971
AMCG00010980 mRNA upstream 9884 6414139 ~ 6415012 (-) True AMCG00010980
AMCG00010976 mRNA upstream 15127 6419382 ~ 6422777 (-) True AMCG00010976
AMCG00010977 mRNA upstream 19311 6423566 ~ 6442741 (-) True AMCG00010977
AMCG00010984 mRNA upstream 71727 6475982 ~ 6509923 (-) True AMCG00010984
AMCG00010983 mRNA upstream 116315 6520570 ~ 6535796 (-) True AMCG00010983
TU129184 other downstream 652062 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 1260170 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 1750520 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 2214652 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 2981450 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 1567369 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 2415296 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 2450650 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 2830156 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 3197629 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile