RNA id: AMCG00010988


Basic Information

Item Value
RNA id AMCG00010988
length 2406
RNA type mRNA
GC content 0.47
exon number 6
gene id AMCG00010988
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 6628570 ~ 6644723 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGGCAGAAGAGTTAACCATGGCATCAGATCAGGAGGCATTTCGCTGGCCCAGAAACTCGGAGGAGCAGCCCCCGACTTACCTGGAAGCATCAGGCAGCAACCCGTTTTATGACGATGAAGATTTATACTCTGGCTCGGGCTCTGGCTTCCCAGACATAGACTTCAAGACCAGGACCAAGCTGACATTCACTACAGAAGTGCCAGTACCCCTGTCCACCACCCAGGCCACCTCCCTTGCCCCATCCGTGCCCCCAGCTGCGATGCCTACGGGAACCCAGAGTGTGCCAGGAGTGGAGAAGGAGAGCAGGGCCCCCGCAACTGAGTCCGTCCGCCGACAACCCAGCCCAGCCGCCTCCATCCCCATGGCCACCACCAGCTCGGTCACCACCACAGCCCAGAAAACGCCTCCCACCACCAGCCTCGTGGACTTCAGCTCCACggtggaggagaaggaggatgTGTTCATCCCTGTGGACAGCACCGAGGAAGCCACTACAGTGCTGCCCACCGTGGAACCCACCAcagctgccaccaccaccactactaccaCAACAGCAGCCCCACGCAGAAAAACAGCCTCTACAACTACCACCACCGCGGCGGCTTCGACCGCTGCTACAACCACGACCCTGGCCCCTACCACAACTACAACCATGACAGCAACCACAACCCAGGCCCCCACCCCGGCCGCCACTGTCCGGCCTCGGGCAGCTAAGACCACCACCCAGCTCCCAGGCATCCAGATCCAGACGGAGCTGACCACCACTGGGCTGCTGTTCACCTCCGTCTCCAAGaCTCAGACACCAGAAGAGACCCTCAATAACGAGGTAGGTGGGGCTGGGAATAGCGGTGATTTCGAGATCCGAGAGGAGGAAACCAACAACGAAGTCCCCAGGGACAAACCTAAAACCCCCACAGACAAGATGGAGCCAGATCTCCTGGGCAACACCATCGACACAGGCAGCTCTGCCGCCCAGCTCCCACAGAAAAACATCCTGGAGAGGAAGGAGGTCCTCATAGCCGTGATGATGGGAGGCTTGCTGGCAATGATCTTCGCAGATTTCCTGGTGATAGCTGTGATCGTGGGTGGTGTGGTTGGGGCCCTCTTCGCTGCCTTCCTCGTCATGCTGCTGGTGTACCGAATGAAGAAAAAGGATGAAGGCAGCTACACGTTGGAGGAGCCCAAGCAAGCCACAGTAACCTACCAGAAGCCCGACAAGCAAGAGGAATTCTATGCATAACCAGCGGCTGCCCTGAGAGTGCCTATTGCTCCACGGACTGTGAACACAAAGAGAACTCTcttttaaagtaacaaaataaaaacaatacaaaaaaaaagaaaacggaaaaaaaagaaaaagttttttattattattataattataataataattataattattattattattattattattatttttttttttaagttctagCTCCTTAACTTTTTCCAGCTCAGTTGTTTTCAACCATTAGTCCCAGCACTGGAAATAAAAGAGAAGGTGGAGGGGGGAAATGTCATTGGACAGGGATATGTGGTGCAGGAAAAGGAGCTGTGGTTGAGTTATCAAGTCTGTTTCCTTATTTCTTTCCCTTAAAAGCTACTGAGGTCTGAGTGAAATGCAGCGCCATCTGTGTAATGAGCTGATTtgaatcagtttatttattaagattaCAAGACAAATGCTGTTCACTGGGTGCTTGTCACTTTAGTACATTTCaggtgaaaatataattaaagtgcAGGACTGAAGGAAAGCTGAAGAAATTTAAGTGGTCCTAGTTGATTACATAATGCGTGATTAAATGAAAGTTGCTGCCGCTAAAGTGAATTACGGGATTAAATCTGAATTCTGTTTGTCATGCCTGCACTGTAGAACTGAATTTCCAGTGCTTTGCCTCTGGAACGCAGTTAGTCTGCCATCGACTCGTCATGCCTGcccataatttaaatgtaaaagagaCTATATCACACAAAGATTCAATGTAGTGCCTTTCACTTCTCCTTAGGCGTTATGTTGTTTATATCAATATCAGTATCAATATCAACCAAACGTTTTAGATGAACAAATTTAGACCCAACCtgttgtgctttaaaataaatgtatacattatagattaaatacattcaataaaaactagGAAAAAATACTAAAGCATTGCCCTTCATCAGCTATTGGTTCAACTATTTCCGCTCTCTTTCCAGCTTCCTGTATGAGTTGTGTATAAAGAATCGCCTGTTTTCAATATGTGTGTATGGTTCATTGTGCCATTGAAAGAGGTTTAACCAAGCCTCTGGATTATattgagaaaattaatttctcagtatatatatatatatatatatacactcacctaaaggattattaggaacaccatactaatactgtgtttga

Function

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K16337 SDC3; syndecan 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129370 lncRNA downstream 1192 6624081 ~ 6627452 (-) True G103539
TU129331 lncRNA downstream 114521 6513863 ~ 6514123 (-) True G103503
TU129292 lncRNA downstream 242040 6384481 ~ 6386604 (-) True G103473
TU129231 lncRNA downstream 654337 5966939 ~ 5974307 (-) False AMCG00010966
TU129136 lncRNA downstream 1012791 5558677 ~ 5615853 (-) True G103362
TU129387 lncRNA upstream 110570 6755293 ~ 6762139 (-) True G103556
TU129388 lncRNA upstream 115416 6760139 ~ 6762139 (-) False G103556
TU129516 lncRNA upstream 471261 7115984 ~ 7171805 (-) True G103645
TU129531 lncRNA upstream 544362 7189085 ~ 7189583 (-) True G103658
TU129532 lncRNA upstream 544362 7189085 ~ 7189583 (-) False G103658
AMCG00010985 mRNA downstream 15892 6594655 ~ 6612752 (-) True AMCG00010985
AMCG00010982 mRNA downstream 67720 6556648 ~ 6560924 (-) True AMCG00010982
AMCG00010983 mRNA downstream 92848 6520570 ~ 6535796 (-) True AMCG00010983
AMCG00010984 mRNA downstream 118721 6475982 ~ 6509923 (-) True AMCG00010984
AMCG00010977 mRNA downstream 185903 6423566 ~ 6442741 (-) True AMCG00010977
AMCG00010987 mRNA upstream 120103 6764826 ~ 6775506 (-) True AMCG00010987
AMCG00010992 mRNA upstream 281047 6925770 ~ 6938226 (-) True AMCG00010992
AMCG00010997 mRNA upstream 468912 7113635 ~ 7126366 (-) True AMCG00010997
AMCG00011003 mRNA upstream 663916 7308639 ~ 7309421 (-) True AMCG00011003
AMCG00011006 mRNA upstream 720519 7365242 ~ 7390566 (-) True AMCG00011006
TU129184 other downstream 880080 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 1488188 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 1978538 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 2442670 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 3209468 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 1326901 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 2174828 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 2210182 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 2589688 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 2957161 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile