RNA id: AMCG00011000



Basic Information


Item Value
RNA id AMCG00011000
length 567
RNA type mRNA
GC content 0.62
exon number 2
gene id AMCG00011000
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7202978 ~ 7203892 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAGGACGAGAACGAACTGGAAGCGCATCAGGTTGAAATCGATCCGGATTTCGAGCCCCAAAGCCGGCCGCGCTCCTGCACCTGGCCGTTGCCGTGCCCGGACGACTTCCCcggaggagaggaggaaaatGGAGCCCTCTGTTCGTCCGCCGTGAAGCGAGAGCCGGATAACGTTACCGCCTGCAGGGCTGAGAGAAGCGGCGGCGCCCCGGCGGAACACAAGCACCCCGCCGCCGCCGCGCTGCCCTGCCTGGCCGGAGCTGCGCTCGATGTGGCCGGGCAGCTTCGCAAAGCCAAGTCGTCCCGGCGCAACGCGTGGGGTAACCAGTCGTACGCGGATCTCATCACCCGAGCCATCGAGAGCACCCCGGAGAAGAGACTCACCCTGTCACAGATCTACGACTGGATGGTCCGCTATGTCCCTTATTTCAAAGATAAAGGCGACAGTAACAGCTCGGCAGGGTGGAAGTCCAGATACCGACATCGCAGACAGAGTGCTGGGAATTCAGCCACTTCGGCGCGGAAGCGAAGCCTGTCCATTGTGACGCTGCGAATAAAGCAATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU129466 lncRNA upstream 99789 7071433 ~ 7103189 (+) False AMCG00010994
TU129446 lncRNA upstream 240787 6961986 ~ 6962191 (+) True G103599
TU129412 lncRNA upstream 275731 6907102 ~ 6927247 (+) True G103567
TU129372 lncRNA upstream 565790 6636963 ~ 6637188 (+) True G103541
TU129371 lncRNA upstream 572988 6628488 ~ 6629990 (+) True G103540
TU129549 lncRNA downstream 104713 7308605 ~ 7309609 (+) True G103670
TU129564 lncRNA downstream 169783 7373675 ~ 7384727 (+) True G103684
TU129571 lncRNA downstream 186110 7390002 ~ 7452292 (+) True G103688
TU129557 lncRNA downstream 191736 7395628 ~ 7398120 (+) True G103678
TU129582 lncRNA downstream 252869 7456761 ~ 7461153 (+) True G103698
AMCG00011001 mRNA upstream 3662 7190221 ~ 7199316 (+) True AMCG00011001
AMCG00010998 mRNA upstream 37710 7157490 ~ 7165268 (+) True AMCG00010998
AMCG00010996 mRNA upstream 54082 7144739 ~ 7148896 (+) True AMCG00010996
AMCG00010995 mRNA upstream 92037 7107285 ~ 7110941 (+) True AMCG00010995
AMCG00010994 mRNA upstream 99470 7088282 ~ 7103508 (+) True AMCG00010994
AMCG00010999 mRNA downstream 25478 7229370 ~ 7230701 (+) True AMCG00010999
AMCG00011002 mRNA downstream 67292 7271184 ~ 7286271 (+) True AMCG00011002
AMCG00011004 mRNA downstream 87379 7291271 ~ 7295876 (+) True AMCG00011004
AMCG00011007 mRNA downstream 351184 7555076 ~ 7559008 (+) True AMCG00011007
AMCG00011011 mRNA downstream 382374 7586266 ~ 7604072 (+) True AMCG00011011
TU129402 other upstream 282047 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 560350 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 2560620 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 3119392 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 3622701 3577235 ~ 3580277 (+) True G103030
TU129898 other downstream 1344471 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 2326582 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 3614796 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 4462306 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 4604954 11808846 ~ 11810696 (+) False AMCG00011115

Expression Profile