RNA id: AMCG00011002


Basic Information

Item Value
RNA id AMCG00011002
length 3290
RNA type mRNA
GC content 0.56
exon number 15
gene id AMCG00011002
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7271184 ~ 7286271 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGGCCGCGGCACTTGCATGGGCCACTCGCCGGAGACCGCACGCCCGTTTCTGTTCCCGCTTCCATCGCCAGGGGTCGTGTCTGTCTCCGGCAGCCagccctcctctctcccccaaaTGAGACGGACTCAAGATCCAGTGGCGAGCAACCCCCCTCGCACAACAACACTGCTGCGCACTAGAAAAAAATGGCGGATAGATACTGAATCCACACCAGACCAAAAAACATACCCAAAACCCTACAGAGCCGAGattGGAGAGTGGATTAGACTGCATTGAGGAGTTGGTCAGTATTACTGGAGCATGAGGAAACCAGGGCCCCAGACAGCTATTGAGTGGAAGGATGGCAGACGGCACAAACACGTTCGCAGTGGCCGGCCCTCTCGTGTTCCTGCACAGTACCAGGGACACTTCAGCTGGGAGAAGTACCTGAAAGAAACTGGTGCCAGTGCCGCCCCTACCCACTGCTTCAGACAGagtGCCACCCCCCCAGTGAACGAGTTCAAGTCAGGGATGAAGCTGGAGGCTCAGGACCCCCGCAACACCACATCCACCTGCATCGCCACGGTGGTGGGGCTGACCGGGGCGCGCCTCCGCCTGCGCCTTGACGGCAGCGACAACAAGAATGACTTCTGGAGGCTGGTGGACTCCTCCGAGATCCAGCCCATCGGCAACTGCGAGAAGAACGGGGGCATGCTGCAGCCCCCCCTGGGTTTCCGTCTGAATGCTTCCTCCTGGCCCATGTTCCTGTTGAAGACTCTGAACGGAGCTGAGATGGCCCCATCCCGCATATTCCACAAGCAGGAGCCCCCGGGCCCAGAGCAGAACTTCTTCAAGGTGGGCATGAAGCTGGAGGCGGTGGATCGCAAAAACCCACACTTCATCTGCCCCGCCACTATCGGTGCCCTGAGGGGGGGGGAGGTGCTAGTCACCTTCGATGGCTGGAGGGGCGCCTTCGACTACTACTGCCGCTATGACTCCCGAGACATCTTCCCCGTGGGCTGGTGTGCCCTCACCGGGGACAACCTGCAGCCCCCTGGCACCAAGGttgtgCTCCCAAAGAGTCTGGCTGCTGTGCCGGAGGGGAGCTCAGAGGGTGCCAGTATGCACCCGGCCACAGGAGCACATCGTCGCAGGCCTGgcaggaggagaaccaggctgCCTGGGGCCTGGGGGCAGGGGGGGGCGGCAGCAGGACCACAGCCTAGCCAGCTTGGTGCTCCCAAAGCCCTGGAGCCCATCAAGATCCCCAAGAAGAGAGGGCCCAAGCCAGGCAGTAAGAGGAAACCCCGTGTGGTACCCAACCCTGTTCCCACCTCCCCCACAAGCAGTACCCCTGAGCCTGACACCAGCACAGTGCCTCAGGACAACGCCACCATTCCCAGCGCTGCCCTGCAGGCACCTACTGTGTGTGTCTACCTGAACAAGTACGGCAAGGTGGGCCCTCATCTGGACCAGCGGAGAGTGCAGCAGCTGCCGGACCACTTCGGGCCGGGTCGGGCGTCCTCGGTGCTGCAGCAGTGTGTGCAGGCCTGCATTGACTGCGCACACAACCAGAGCACTGTCTTCTCCTGCCTCAAACCGGGCCACGGCGGCGAGGTTATCTCAGCCCTGtttgagcagcagcagcacacccTGACTCTGCCTGCGGTGAACAGCGTGACCTACGTGCTGCGCTTCCTGGAGAAGCTCTGTCACAACCTGCACTGTGACAACCTGTTCGGGAACCAGCCCTTCACCCTGAGCCCACTGCACTTCAACAGCTCCGTCTACCTGCCCGACAGGAGGAGTTTCGGGGAGGGTCTGTCTGCGGGACCGGGCCGGGGCAGTAAGAGGTATCCCCAGGAGTCGCCCCCCTACACCACCCCTCTCTCGCCCAAACAGCCTAAAGTGCTCCGTCACCCCTCAGAAGCAGTGCCCTTCCTCTTGGAGAATGGGGTCGGAGGAGGCCTGGAGTCCCGTGTGGATGGTCTGGATCCCTCGCTGACCCCAGGGACACCTACCAGCCCAGCCTGCAGCTCCCGTGATGGCCGGCCGCCCCCTCTGCACTCCTTCTCCCAGAAGAGCAGTCCTGTTGGCAAACTGCATCGTCTCAGCTCCACAGGCTCCGAGCGTTTCCTAGGCTCTCGTGACAGCCCTCGCAACAGCGTCCGGGACCCCAATCTGTGGACAGTGGAGGACGTCATGCAGTTTGTACGGGACACTGACCCCCAGCTGAGACCACATGCTGACCTCTTCCGGAAACACGAGATTGACGGCAAGGCGTTGATGTTGCTTCGCAGTGATATGATGATGAAGTACATGGGGCTGAAGCTGGGGCCTGCCCTCAAGCTGAGCTTTCACATCGACAGACTCAAACAAGGCCGGCCCTGAGCcccaacccccccgcccccaccaccACTCTCTGTATGATGCAGGACGACGCTCAGCAATGACGGGCCATCTGGGAACACGCCCTCCACCGCAGTATCAATTACTGGGCTGGAGGACACTGGGGCACGGATGCCCATTGCACCAGCAACCCAGCATTCTCCGGGGCTCTGCCCAGCCCCGCCCCCATGAACTTCCCGTTATGCTTTTTTGTAGCATTCGCCAACCCACTAGGATCATTGGTACTCAGATGCTGCCCAGCGCCTGttctttctatttcttcttcctttcatgttgtttcattAGAAATCCTTGCCAAGGACTCTTTTGTAAAGAAACCACAGCCGTTGGACAATGGTGGCCTTTTTGGGCCATTTTTTATatgactgtttttttgtttttttgctcagCCCTTAAAGGGGGGAGCTTCTTTCTGTAAGACTGTTactcttaataaaataaacaggtaaACACTAGCTCTTTCCAACACGATTAGAGTTTAGTTGGACGTTGTCTCTTTTTGAGACCTTTTCGTATACTTTATACAGCAATACTGGAATAAAGCAGTGTCTGGGTGCTTattataacacattttcttttaattattacaaatattcaaaattaCTGTTGGTGTTTCCTTCCTGTTccttatatttattattattatttgttttagttttgttggtGTTTCACGAGTTCCACACAGCTTTAGTGTACAGCAGTGTGCttctcagtcctggtcctgggaTGCCATGCCCTGCTATTttctgttccagctgagctctcaattacttcattactaGTAGGGTACTTTATTGAACCCTACTTTAACTAATAATTTTCCTAATTTGAGATCTTAAATCATTTTATACAGTTGTAAGCTGCACaatataaaaagtcaaatgaagcaaattagttcaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11461 SCMH1; polycomb protein SCMH1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129466 lncRNA upstream 167995 7071433 ~ 7103189 (+) False AMCG00010994
TU129446 lncRNA upstream 308993 6961986 ~ 6962191 (+) True G103599
TU129412 lncRNA upstream 343937 6907102 ~ 6927247 (+) True G103567
TU129372 lncRNA upstream 633996 6636963 ~ 6637188 (+) True G103541
TU129371 lncRNA upstream 641194 6628488 ~ 6629990 (+) True G103540
TU129549 lncRNA downstream 22334 7308605 ~ 7309609 (+) True G103670
TU129564 lncRNA downstream 87404 7373675 ~ 7384727 (+) True G103684
TU129571 lncRNA downstream 103731 7390002 ~ 7452292 (+) True G103688
TU129557 lncRNA downstream 109357 7395628 ~ 7398120 (+) True G103678
TU129582 lncRNA downstream 170490 7456761 ~ 7461153 (+) True G103698
AMCG00010999 mRNA upstream 40483 7229370 ~ 7230701 (+) True AMCG00010999
AMCG00011000 mRNA upstream 67292 7202978 ~ 7203892 (+) True AMCG00011000
AMCG00011001 mRNA upstream 71868 7190221 ~ 7199316 (+) True AMCG00011001
AMCG00010998 mRNA upstream 105916 7157490 ~ 7165268 (+) True AMCG00010998
AMCG00010996 mRNA upstream 122288 7144739 ~ 7148896 (+) True AMCG00010996
AMCG00011004 mRNA downstream 5000 7291271 ~ 7295876 (+) True AMCG00011004
AMCG00011007 mRNA downstream 268805 7555076 ~ 7559008 (+) True AMCG00011007
AMCG00011011 mRNA downstream 299995 7586266 ~ 7604072 (+) True AMCG00011011
AMCG00011010 mRNA downstream 325007 7611278 ~ 7618265 (+) True AMCG00011010
AMCG00011014 mRNA downstream 480008 7766279 ~ 7767019 (+) True AMCG00011014
TU129402 other upstream 350253 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 628556 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 2628826 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 3187598 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 3690907 3577235 ~ 3580277 (+) True G103030
TU129898 other downstream 1262092 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 2244203 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 3532417 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 4379927 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 4522575 11808846 ~ 11810696 (+) False AMCG00011115

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_02965137_02979305.mRNA True 2258 mRNA 0.53 13 CI01000016 2965137 ~ 2979509 (+)