RNA id: AMCG00011004


Basic Information

Item Value
RNA id AMCG00011004
length 1725
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00011004
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7291271 ~ 7295876 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAGAGCCAGCTGCCAGTAACGATCACAGTGTCTGCATTGCCACAAGCCAAGGAACCCATGAGAATAATGAAGGGCCGCAGACCATCGGCAGTAAACACAGACCTACCTGCAGTGAACCTGGTGACCACAGTACTGACTCTAGTATTGGCAGCAAAAAGCCCACCATCAACAGCTGGGATCCCAGTGTCTGCCCCTCCAGTACAGAAGAACCCCACGTTGACCACAAAGATTCCCTCATTGTGACCACACTGTCAGCCCTAGTAACCACAGCGTTTCCCTTCCTGTCTGTGACCATCAAGTTTGCCCTCTGTCAAGTTGACCCTGCTACCGAAGCCAGCATCCAGGATCTCCTTCCTAGCAATAAGACCAACCCACCTACTCCTCAGACTGGTCCTGCATTTGATCCCGAGGCAAGTTACAGGGAGTGTGGCTCTTGGGGGCCTCCAGAGACCAAGGAAGCCCAGTCAGGACCTGACACAGTGCTGGAGAGGCAGGGATTCAGTAAGAAGAGATCCTCCACAGGCTATGGGAGGCTGCGGGTTGGGCGGAGGTCTGTCTGGGGCAGGCGCCTAACTGCCAGACAGCAACGACTGACAGAGGAGCGCTGCTTCAGGTGGGGTTATCTGCCTCATGCCGAGCCGGGGGTCACGCAGTCGGACAGCGCCATCAGCAGGCGGGGCATTGCGGGCAGGGAGAGGCTGTTTTACGGGGCGCAGATAGGCAGCGAGACGCGCAATCTGGAGTTCAAGCTAGGGAGAGGCAATAACAATGAGGTGTTGCTGAGAGTACTGACCTGGGGAGGGGCGGGGTTTTCCTGTACCCTAGGGCATTACCTGAGGAATATATTCCAACACGACCTGCGCAAGTACGCCTGCGCCTTCCTGAACGGGGAAGGGGGGAGCCTGCTGGTGGGAGTGGACAACGCGGGTAAGGTGCGGGGGGTGTGCTGCAACCACCGGCTGCAGGACCGAACCCGGTTGATGGTGGACGCCATGTTAAAGCGCTTTCAGCCCCCACTACTGCCCCACAACTACAACCTCAGCTTCCTGCCCGTGGTGCAGCCCGGCACCTCCCAGCCCTTCCTCCAAGTGCTGCGCTTCAGCGTGTGGCCCCCCCCAGTCCCCGACCCTCCCATGCTCTACCAGACCGACCAGGGCATGGTCTACCTGCGGAGGGATGCCAGCGTTGAAGGACCCCTGACAGCCGGCCTGATCCAGCAGTGGTTCAGACAGGTAGAGTCTgTGCGGCCCCTGATTTCTCGTGCTGAAGGCTGCTTTGTGGTTTGTGTTCAGAGGTGGAGTGCTGCAGTGGAGGGGCTTCGGCAGCAGTTTATGGAGGAACTGCAACTCTGGGAGCCCAGAGATCAGAGCAGAGCAGGTCCCTCGCTGCAGCGTGGACAGAGGGACAGGCGTAGTCGTGCCACATTACCCTTCTCCACTTGCCGCAATGGATTCAATAGAGAGGACTCGCCTTCGGGGAACCTGGTGCCAACCGCCAGTCACACAACAACTGTGCACCGGGGATCCGTGCAAAATCACTCGGCACTGGGATCAGTTAATGTCACCCAGAGTGAGCAGCCAGATCATCACTTGCAGACTGCTGTAAATCAAGGAATATCTAGAAGCAGAGAATCCACTGCCAATCAGAGATCCAACACAGGGTCTTCATCAGGGGATAGACTGCAGCGAAACCTGTGCGGGGGTTGCTGCCATCTACTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129466 lncRNA upstream 188082 7071433 ~ 7103189 (+) False AMCG00010994
TU129446 lncRNA upstream 329080 6961986 ~ 6962191 (+) True G103599
TU129412 lncRNA upstream 364024 6907102 ~ 6927247 (+) True G103567
TU129372 lncRNA upstream 654083 6636963 ~ 6637188 (+) True G103541
TU129371 lncRNA upstream 661281 6628488 ~ 6629990 (+) True G103540
TU129549 lncRNA downstream 12729 7308605 ~ 7309609 (+) True G103670
TU129564 lncRNA downstream 77799 7373675 ~ 7384727 (+) True G103684
TU129571 lncRNA downstream 94126 7390002 ~ 7452292 (+) True G103688
TU129557 lncRNA downstream 99752 7395628 ~ 7398120 (+) True G103678
TU129582 lncRNA downstream 160885 7456761 ~ 7461153 (+) True G103698
AMCG00011002 mRNA upstream 5000 7271184 ~ 7286271 (+) True AMCG00011002
AMCG00010999 mRNA upstream 60570 7229370 ~ 7230701 (+) True AMCG00010999
AMCG00011000 mRNA upstream 87379 7202978 ~ 7203892 (+) True AMCG00011000
AMCG00011001 mRNA upstream 91955 7190221 ~ 7199316 (+) True AMCG00011001
AMCG00010998 mRNA upstream 126003 7157490 ~ 7165268 (+) True AMCG00010998
AMCG00011007 mRNA downstream 259200 7555076 ~ 7559008 (+) True AMCG00011007
AMCG00011011 mRNA downstream 290390 7586266 ~ 7604072 (+) True AMCG00011011
AMCG00011010 mRNA downstream 315402 7611278 ~ 7618265 (+) True AMCG00011010
AMCG00011014 mRNA downstream 470403 7766279 ~ 7767019 (+) True AMCG00011014
AMCG00011015 mRNA downstream 473142 7769018 ~ 7778092 (+) True AMCG00011015
TU129402 other upstream 370340 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 648643 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 2648913 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 3207685 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 3710994 3577235 ~ 3580277 (+) True G103030
TU129898 other downstream 1252487 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 2234598 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 3522812 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 4370322 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 4512970 11808846 ~ 11810696 (+) False AMCG00011115

Expression Profile