RNA id: AMCG00011008


Basic Information

Item Value
RNA id AMCG00011008
length 6177
RNA type mRNA
GC content 0.50
exon number 28
gene id AMCG00011008
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7529457 ~ 7551615 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGCTTTGTAAGGTAACATCTGCAGGAGAACTCGATTTAGGTCGCGTTGTtgcagcgcagatttccgcagctctgcgccCTAGTTACTGCGCCGGACGCtgcccttttcttttcttctttctttttttctgaggTAGTTTTCGGAAAATGCTTGGTCATCCGAAAGTACGGAGTGCCTGTCATACTATGAATGAGATCACGGCTCACAGTACTCTCGGGAAGGCAGCAGATGTCGCAAGTCGCTGCTGCACTCCGCCGGCGAAGTTTGCGCAGGGGCGGGCCTGCTGGGAATGGGAATGTGCGCCTGAACAGCCGCGCTACCTGAGGAATTGCAGGAACATGGCTGCGCTGCGGACGCAAGGTGTGCTGACCTGAGACGCGCACCCTTTGGCCCATTTGTGTATCTCTGCAGAGACACTGGACGGGACATGGAGGCTTCCGAGCAGAGGACGGACCTCCACAACGACCCGAAGAGAGAGCACGGCAGGGTGTCCGCCGGCAGCTTCTGGCAGGACCCGCTGGCTATAGAGTTGAGCCACTCCAGCAAGAGCGCGGTCTCCCCCCGCAGCCGGACCCGGGCCGTGACGGTGGTGTTCATCGCGGTGGAGGACGCGTCTTTGCCGCAGACGGAGGGCAACCTGTCGTTGAAATGCCTGGCAGAAGCCTGTGCCAGTGCCCACGCCGCGCTCCTCACCATCCCGTTGGAGAGGCTTGCGCTGGGAAGCACGGATATTCTGGACAGCTTCTATAACGCAGatgttGCTGTGGTGGAGATGAGCGACTCGTTCTGCCAGCCTTCTCTCTTCTACCACctgggtgtgagagagagcttCAGCATGACCAACAACGTCATCCTCTACTGCAACAGACAGCAGACTGATCTCCAAGCATTGAAGGAGCAATGTGGAAGCTACACCTTTATTCCCTACATGGTGTCGCCCCAGGGGAAGGTGTTTGCCTGCGACATAGGCTTGATGAAGTGCCTCAACGAGATCCTGCAGCCCAGCTTCATGATTGAGCCTCTGTTCACCCCGCTGGTCGATCGTCTGGTGAAGCTGTTAGATAGCACTCACATTCACTCGTGTGAATATTTCCGAGAGACGATCCGGCACAACATTCGAACAGCGAGGGAGAGGTACAGTGGGAAGGAGCTGAGTCTGGAACTGGGCCGGATCCAGCAGCGACTGGACAGTGTAGAACTGCTGAGTCCAGACATCATCATGAACCTGCTGCTGTCCTACAGGGATGTGCAGGACTACGACGCTATTATTAATCTAATTGAGACCTTAAATAACCTACCGACGTGCGTTGCAGCTATGCAGCAGAACATAAAGTTCCACTACACCTTTGCACTAAACAGGAGGAACCATCCTGGGGATCGGGAGAAAGCCCTGTCTGTCATCCTGCCCGTGGTGGAGTCCAGGGAGCGCGTGGCCTCGGACCTGTACTGTCTCTGCGGCCGTATCTACAAGGACATGTTCATCAGCTCGGGTTTCACTGACCACGTTAAACGAGACCAGGCCTGCTACTGgTACAGTAAAGCTTTTGAAAGTGAGCCCACCCTGCACTCAGGAATCAACAATGTGGTTCTCTTAATGGCAGCAGGCCACGACTTTGAAACCTCAATTGAGCTGCGAAAAATCGGGGTGAAGCTCAGCAGTCTTCTTGGCAGAAAGGGTAGCCTGGAGAAGATGCAGTTCTACTGGGATGTGGGGTTTTATCTAGGAGCCAGCATCCTGGCCAAGGAATCAAAAAAAGTCATTGAGTCCTCCGAAAAACTCTACAGGCTCAATGTACCAATATGGTACTTAGGATCAGTTATGGAGACATATCTCATGTTTAAGCAATTCTACAAACCCTCTGAGGAGAAGTCCCCCAAGCAGGAAATCGTGGACTTCTGGATGCAACTGTTAATGGAGGCGTGTAAACCCACAGTGTGCAACGACAGATGCCCTGTTCTCATATTAGAGCTCACTAAAGTGTTTCAGCCAGCTGTCTTGAGTGTGATTGAAGAGGAAGGCAACACGACCATAAAGCTAAAACACATTTCTCCTTCAGAAGAGaaaGGGTTGCACCACTGGACATTTCCGTCCTCCGCAATCCGAGGAGTGAGCGTTTCAAAGTTCGACGAGCGCTGCTGTTTCCTGTATGTTCTGTATAATTCGGATGATTTCCAAATCTATTTTCCAAGCGAGCTGCACTGCAAAGGGTTCTGTGACGTGGTGAACTCTCTCGTCGAGCAGAATGAAGCCAGTCTTGAAGACCCAGGGGTGCGGTCCAGTGAGGTATTGGAATTTGCATATGAATATGACGAGGCAGATCAGAGGGTAGTGCTGGGAAAGGGGACGTACGGAGTCGTGTACGCCGGCAGGGATCTCAGTAACCAAGTGCGAATTGCCATCAAGGAAATCCCAGAGAAAGACAGCACGTACTCTCAGCCGCTCCATGAGGAGATCGCCCTGCACAAGCGCCTGCAGCACAGGAACATCGTGCAGTACCTGGGCTCTGTCAGCCAGGACGGCTTCATCAAAATCTTCATGGAGGAAGTCCCTGGAGGAAGCTTGTCTTCGCTCTTGAGGTCCAAATGGGGGCCTCTGAAGGACAACGAAGCCACCATTGTTTTTTACACCAAACAGATCCTCGAAGGGCTCCGGTATCTCCACGACAACCAGATTGTTCACAGAGATATTAAGGGTGATAATGTCTTGATTAACACTTACAATGGTGTCCTGAAAATCTCAGACTTTGGGACTTCCAAGAGGCTGGCTGGAATCAACCCTTGCACAGAGACTTTTACAGGTACTCTGCAATACATGGCACCAGAGATTATTGACCAAGGCCCAAGAGGCTATGGGAAGCCAGCTGATATCTGGTCACTGGGCTGCACTATTATTGAGATGGCCACAGGGAAACCTCCCTTCCACGAGCTGGGCAGCCCTCAAGCTGCCATGTTTAAGGTGGGGATGTTTAAAATCCATCCCCAAGTCCCAGATTGCATGTCTGAAGGAGCCAAGGACTTCATACTGTGCTGTTTTGAGCCAGATCCAGACAAAAGGGCCTCCGCTGCCAAACTGCTGAAGGACTCCTTTCTCAAGACCCCCAGCCGCAGGAAGGCCAAGTCTCCCGCTGAAGCCTCGCCTTATGACCCCGGGTCACCAGGTGAATATCAGAGAAGCATGTCTGTGCCGGTGTTGGTGCGAGTGGAGGACACCTGCACCAGCGAGGAGATCGATCTGTCTTGCTCCTTGGACCTGCGGAGGACCCAGGCTGTTCGGCAGAGGAGAGAACCCACTGACAGCACACCCAGCACCAGCTTCCTCCCCGTTCCCGAGGAGCCCTTCTATGACGTCAGCAGCCCTGCCAGCCCGGACGAGAACATGGGCCTGTTCATGTTGAGGAAGGACAGTGAACGGAGGGCCACTCTGTACTGGATCCTCACTGACGACATCGACACTGTGGTCAGCAGCGTACAGGAGGGCCTGCGTCAGACTTCTAAAGGGCCGCAGTTCACAGCCGAACACGTCCATCAGCTGATCACCTGCTTGGGAGAGAACATCCACTCCCCTGACAAGAAGAAACTCAACCAGAGTCTTCTCAAGTTCAGGGCGAACCTGGTGGGAGCTGGAGTTCCCCTTGATAACCTGCAGGTGGTGCTGTTCAGCTTTCAAGATGCTGTGAAGAAGGTCCTAAAGAAGCAGAACGTGAAGCCCCATTGGATGTTCGCCCTTGACAACCTCCTGAGGCGGGCAGTGCAGGAATCCATCACTGTGCTCCTCCCAGAGCTCAAACTGCATCTGCAGTCCTCGTTTGAGTCGGAAGAGCAGGAGTTCACCACCCATGAAAGTCCTCAAGAGCACCAGGTGGAGAGGGCAGGTTCTCTCAAGGACCAGGATGTAGTTGCCACTGAAAGTCATGACGTAGAGACGTCAGGGGTGAGCACGCTCAGCTCCTGCACACTGAGTGACTTCCGCTACAATAGCTGTCACTTGGTTCAGCAGCTCAGACAGCTCCGCATGGAGACCACTCGCCTGCTGACCCAGCTCAACGAGAAGGAGATGGAGTACCAGCATCTGCTCAGGGAGTCCGTGCTGAGGAAGCAGGAGGAAATTGAGTTTCTCAAAGCCAGAGTGTCGTCGGAACCCATGGATATTTCTCCTCGTGCCTCGTGCCACCAAAAGACTGATCCTGATGATTCTGCGCTGATCCAGTGGTTACGGTCCATCCGCACTGATGAGGACACCATAGACAGATTACTTGCACATGGGTTCACTCTACAAAGCCTGGTTTACATTGCTTCAAGGGATGACTTGAAATACTCTGGGATAAGGGGCAGTAAGCTTTGTAGAATATGGGCAGCTATCAAAATGCAGAGAAAATCCCACATCAAACACCATGGACTGCCAAATGCTTCATATGAAAACACAACTCTTTGACGCATCCTTCTGGATCCATCTATCCTTCAGCACAGCAGCTGCACTCCAACTCCACACTTCAGCTTCCAAATCGGAGGGAAGTGTTTTGAAGCGCAGTCCCTCAAATGCCTGCAGATCCTTCTGGTGCAAAGCAGGGTAATTCAAGGTACTGACATGATGATTAACATGATGATCAATCAAAACAAGTTTGATTTAGTTCCATGCAGTATCCTGGTCCTATTTCAAAGGGATggtttttaaaaaagtattatgtCCTGAAAGTTgctggagaaagaaaacaacatgttCTGACTGACCTGTAAGCATCAaggttgttttaatttttgttagAAATTGATTGACAGCTATGTTTGTCCTACTGTAGCTGCTGATTCAAGATGTATTGATGGGGGAGAGAATAAGTGAGTTTACATATTTATCACTGTGGTAACTGGAAGGAAATGAAGCCTTTAAATAGAGTTTACCGTATGGAGATACTGTCATAGAAATCAATAGCCCCTCCGACTTTGACTGTAGTGCAATCCGTTTTTATGCACCGTGGTACTCTAATCAATCGGTGTTGCGTCGATTAATTGCTGAGAATCATTTCTGAGTGTAACCCACACCTTTTAAGCTAAGCAAGAGAGAATGAGAGGCGTTCCCTGCAGTCTCAGAGGGGAGGTGTCAGGTCAGAATGGAGGCAGTGGGCTGAGGTTCAACAATGATGCTACATAGAGGTAGCACCGAGTGCAAGTGGGAATACAGTAAAAGCAGGACAGTATGTGCATTAAGACTGAACTAGGAGTCTGCTTTTGGCTGCTCTGCACTTTGAGGCATTTTGCATCCAACTGTGAGCTCACGGGTCCCATTACAATAAGCGCTCTGAGTTCAGGGAAAGGGCAAAGGGAAGAGCTCCAGTTTTCCTTGGGAATTTCAGGGGCTCCTTTGGGAAGCTAGAGTTAAAATGATCTTCAGCCAACCCAGGCGtttcgcacacacacacactgtatgtataggcaactttaaaacaaatcacgCACACTAATTGCTTTCTTCCAATGCACCATGACAAGCATTTATTGGTCAACTATAAGGGGAGGGTTTGAAGCCAGGTcattctgatttgttttgttagtaGTGCTTTCAAAAGGGCCTGTGTCTTGTATCGGGCCCTGCTCAGGGGCATCTGTAGGGAAGAagggaattaaaatgtaaagcaggGTTGAAGCAGTCGTTTGCCGAGATGCTTGCCACTGGATGCTGAAAGAAATAATGTAGGCAGTGTGTATCGCCTGCGACTAATATATGTAGCAACAACGTCCTCAGTCTGGAAGTGTTCCCCATATTTATGTTTCTAATAAAACCCTGTCAGGAGACCCAATAGGCGTGACTGGGTTACATTTATGTACTGCCTTTTGCACAGATTTGTCAATTGAAACAGGCATCCAGGACTCAGGTGGTTAAGACAGCATAGGTACACATGTCTTGTAAACAGTCTTCACATGCATCCAGTATGTAAAAGTGGTACCAACTGCTGAATTTGAATGTCttgtatttctgttcttttttatcCCCTCTGtaataattacatgtattaaatcTGTTGCTCATCCTGTCAtattactgtacacacacaatgTCTGAACTATCTGACTACTAATGTGTACCagctatattttaaatttaatattttgttttgatacagaatatatattggACAAgttcttatattttattaaaaaaacaacaacaacaacatcaaaaa

Function

GO: NA

KEGG:

id description
K04426 MAP3K5, ASK1; mitogen-activated protein kinase kinase kinase 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129541 lncRNA downstream 296143 7230954 ~ 7233314 (-) True G103666
TU129531 lncRNA downstream 339874 7189085 ~ 7189583 (-) True G103658
TU129532 lncRNA downstream 339874 7189085 ~ 7189583 (-) False G103658
TU129516 lncRNA downstream 357652 7115984 ~ 7171805 (-) True G103645
TU129388 lncRNA downstream 767318 6760139 ~ 6762139 (-) False G103556
TU129712 lncRNA upstream 225393 7777008 ~ 7779941 (-) True G103794
TU129760 lncRNA upstream 386522 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA upstream 419336 7970951 ~ 7975247 (-) True G103832
TU129800 lncRNA upstream 504866 8056481 ~ 8056683 (-) True G103859
TU129839 lncRNA upstream 616080 8167695 ~ 8167924 (-) True G103893
AMCG00011009 mRNA downstream 22291 7451069 ~ 7507166 (-) True AMCG00011009
AMCG00011005 mRNA downstream 120761 7392972 ~ 7408696 (-) True AMCG00011005
AMCG00011006 mRNA downstream 138891 7365242 ~ 7390566 (-) True AMCG00011006
AMCG00011003 mRNA downstream 220036 7308639 ~ 7309421 (-) True AMCG00011003
AMCG00010997 mRNA downstream 403091 7113635 ~ 7126366 (-) True AMCG00010997
AMCG00011012 mRNA upstream 80450 7632065 ~ 7647012 (-) True AMCG00011012
AMCG00011013 mRNA upstream 181808 7733423 ~ 7742566 (-) True AMCG00011013
AMCG00011022 mRNA upstream 433666 7985281 ~ 7994619 (-) True AMCG00011022
AMCG00011023 mRNA upstream 445923 7997538 ~ 8026488 (-) True AMCG00011023
AMCG00011021 mRNA upstream 479562 8031177 ~ 8037256 (-) True AMCG00011021
TU129184 other downstream 1780893 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2389001 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 2879351 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3343483 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 4110281 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 420009 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 1267936 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 1303290 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1682796 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 2050269 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile