RNA id: AMCG00011009


Basic Information

Item Value
RNA id AMCG00011009
length 3856
RNA type mRNA
GC content 0.51
exon number 21
gene id AMCG00011009
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7451069 ~ 7507166 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGAATTGGGGACTATTTCACAGTGTCCTTAAAGCACTGCGCATTACCAAGGCTCATAATAAATGCACCCCCACCCCTTATGATTGTATAATGAGCTGCACAGATGACAAGTTCAGTCTCTGGACCGGTTTCATGTACGCCCAGAGCGAACTGGAGGAGGCTGTCCGTCCTGTGGAACGGAAGAAGAGGAGCGCTTCTAACTGGCCTGCTTCAGGGTCGGCCGGCCCCTACTGTGCAGCGTTTATCTGCTTTTATTCCATTAAACACGTGCTGCACAAGAGACCCCCAGTGCTCCAGGCTCATGGTTTAATCCAGACGACCCATAGCTGGGTTGGCTTCTCCCACACATCTGAGCTGCTGGTGCAGAAGGCCCGCTGCTGTGGGCCCCCCACGGTGGTGCTGCCATATGCCCCTGAAGTGACCCCCAAGGAAGAGGTGAAGAGCCCACCGAAGGGAGAGCCATCACCAGCCACCCCTGGCATGAGCGTCAGTCCCCGGCCCAAACAAGATGGCATGAAAGCAGAGGACAGACAGAAGCTAGCCAAGGAGAGGCGGGAGGAGCGTGCCAAGTACCTGGAGCAACGTAGCATGACGAAAGCTGCCAAGAAGACACAATggctggagaaggaggagaaagcCAGACAACTGCGTGAGAAGCAGCTAGAGGATCGCAGAAAGAAGCTGGAAGAGCAGAGACTCAAGGCAGAAAAGCGAAGAGCTGCGCTGGAGGAGAGACAGCGGATCAAGCTGGAGAAAAACAAGGAGAGATATGAAGCTGCCATCCAGAGATCAGCGAAGAAGACATGGGCAGAAATCCGCAAACAGAGATGGTCCTGGGCAGGAGGCCTCAGCCAGAATTCACAGAGAGAAGGTACAGGCAGATGTTCGGTGTCAGCAGTCAACCTTCCTAAACATGTGGATTCCGTTATAAACAAGAGGCTGTCCAAGTCCTCTGCCACCTTGTGGAATTCTCCGAACAGAACCCGCAGTCTGCAGCTCAGCCCCTGGGAGAGTAGCATTGTGGACCGCCTGATGACGCCCACCCTCTCTTTCCTGGCGCGGAGCCGCAGTGCCGCCACACTGCTGGGGAACGGCAAGGATGCCCTCTCGCCCCTGTGCCCTCGCTCGTCCTCAGCCAGCCCCCTCACACCCTGCAACAGCCACCGAGCTCACCACCACCGCTGCTCCGATCGCTGGAAAGTGTCCGCCAGCACCCCAGACATCACCCAGCGCCGACGCCGGGACTCCACACCGatggagaagaagaagaaagagaagaaagacaaagagcGAGAAAACGAAAAAGAGAAGAACGCcctcacaaaagaaaaagtgttgAAGAAGAGGCAGTCTTTGCCCAGTATTAAACACCGAACAGAGTCCAGTCCATTGCCCAAGAACCGTCCCTCGTCCCCGGCACCCCCGAAGGCACGGCCTGCCTCCCCGAACCCAGCAGTGGCCCCCAAACCCCCCTCCCCGCGTGCCCCCCCAACTGTACCTAAGCTCCGCACTAAGAGATCGAAGACCCCGGCCCGGGCAGAGCAGCGCACAGCCTCGCCCATTGCTGTGGACAAGATGAGAGAGGCGAGGCGGCCAGCTACGCCGGACGAGAACAGAGGCTCAACCATTGTCCCAGCCATTATTGTGTCCTCGGCTCCGGCAACGCCCCCTTCTTTGGCTGCACCAATCACAGCTCCCACCCCCTCTTCCTGCTCTGCCTCAGCCCCAGAGCAAACCCCGCCTGCGGCTGTCCCCGCGAGTGCTCCTGCCAGCAAGCCCATGGCCGGCACCAACGACCCCGAGGAGGCTGCCAGGATCCTGGCCGAGAAACGCAAGCAGGCCCGGGAGCAGAGGGAGCGAGAGGAGCAGGAGAAAAGAGaacaggaggagagagacagGGTCCTGCGAGAGGAGCGGGCAGTGAGGCAGGCGGAGGAGAGGAAGCAGCGTGAGGCCGAGGCCCAGAGGCTGGCAGAGGAGCGCAAGCAGCAGGAGGAGGTGCAGCGGCAGGAGGACGAGGCCCGGCAGCAGAGGGAGGCAGAGGAGAAGGCCCGGGCCGAACAGGAGGAGAATGAGCGGCTCCAGAGACAGAGAGACGAGGCGGAGGCGAAGGCCcgagaggaggcagagaggcAGCGCCTGGAGCGAGAGAAACACTTCCAGAAGGAAGAGCAGGAGCGTCTGGAGAGGAAGAAGCGCTTAGAAGAGATTATGAAAAGAACACGAAAAACAGATGGTGGAGACAAGAAAGATGCAAAGTCTTCCTCTCCGGCACAAGTAAACGGCAAAGATGCCAAACCGGATCCTGAGAGCAAGAAGGGGTCAACTAACTCCCAGCAAGCCCTGGGCTCCATGATGTCCAACAAGGAGGTAGAGGAGGCCCAATCACAAAGCAGCATGAAAGACAGGCCAGGGGAACAGACCACTCTGAGCCTCCCAGTGAAGGAATCCCTTCCCGTGGTGAACGGCGTGCAGACCGCCAAACACGAAAATGGCCTGTCTGCCAAGGGGGAGGGCACAGACTTTGAGGAGATCATTGAGCTGGCCAATCACAGCGGCAGCAACAACGGAGGGCGGGAAAAATCAGAGAGTGAGCCAATCCTGGCCTTTGAGTCGGAGGAACCCTTCCTGAAAAAGGCCAGTTCCCTGAAGACCCAACACaagtCCTCTGAGAAGGAGATGATTGGAGATGTTCACCACTGGATGGACAGACTTAATGACCACAGCACAGCTTAGAACGAGAACTGTGCCAAATAAAGATTGACTGCTTTTTAgattaatagaaataaaaacaagacaaacaaaatatacacatgaaaaaaaaggaagaaaacataaCAGCAATGACTTCATCGAAGAAATAATTAACTCTGGAAAcaagcaagagaaaaaaaaaatgaaaatgtttattcacATCTTCTTCACTTGCGATTATGGTGCAACAGTGTTACATTGTACTTTTGAAATGAGTCTCTCACGCAGTTTTTAACATGCACCTTAAAAGACTGACAGCTTAAttcattgtaggaatacagacCACAACACCAtatttgacattattattattattattattattattattattattattattattatgagttgGACAAAGAAGTGTGTTggttatttttgtctttaataatttagttatttaacttGAAAAATGTAAGCAACTACTGGGTACAGTGTATgtgaataatgtaaataaacctCACAGTGTTGCACCAGGTTGCGTTGGTGGGCCCTGTGTAATAAAGGTTTATAAAAGGGAGCCCAGAGTCTGCTTTGATTATAGGGGAGTACATCTCAAGCGAGTGTGCTTTCAGAAAGACCTTTTGTTGAACTTTTTCTGGAAAGGAGTGGGGGTGGgataagtatttatttgaaagctgGAAAATAAGTTGATCTCATGACTGTTATCTGTAATTTGCTCTCCTCGGGATAACAACTATCATCATTTGGAGCCTGGTGAAACATTCTTTTTCTACAGTTGGCATCTCTGGAACGACGCACGAAAAGCCTGCGAATCCTGACGATGAGTTTGTAAATGCAGGCCAAGCCTTTGGTCACAAACTGTGCTGATATCCACACAGACATCCTTGTGGATGGCCTTCTGCATTTTCATGTGGTAGATTAATTTCTTGGGGGCCTGCCAAATTCAAAGTCAGATGGAAATCGGAAAATATGACTAACAAGCTACAAAGATATCATAATGAAActttcatcttttttatttttatatgtaaagtTTGCATAGAAGGTTAAAGAGTTGTTTGAGACTGTAGtagaatttatgttttttgcatCCCAGTTTCTGTTCTGTTGCAATTAAAGCTGCTTATGACGGTTGATA

Function

GO: NA

KEGG:

id description
K16806 MAP7D1; MAP7 domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129541 lncRNA downstream 217755 7230954 ~ 7233314 (-) True G103666
TU129531 lncRNA downstream 261486 7189085 ~ 7189583 (-) True G103658
TU129532 lncRNA downstream 261486 7189085 ~ 7189583 (-) False G103658
TU129516 lncRNA downstream 279264 7115984 ~ 7171805 (-) True G103645
TU129388 lncRNA downstream 688930 6760139 ~ 6762139 (-) False G103556
TU129712 lncRNA upstream 269842 7777008 ~ 7779941 (-) True G103794
TU129760 lncRNA upstream 430971 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA upstream 463785 7970951 ~ 7975247 (-) True G103832
TU129800 lncRNA upstream 549315 8056481 ~ 8056683 (-) True G103859
TU129839 lncRNA upstream 660529 8167695 ~ 8167924 (-) True G103893
AMCG00011005 mRNA downstream 42373 7392972 ~ 7408696 (-) True AMCG00011005
AMCG00011006 mRNA downstream 60503 7365242 ~ 7390566 (-) True AMCG00011006
AMCG00011003 mRNA downstream 141648 7308639 ~ 7309421 (-) True AMCG00011003
AMCG00010997 mRNA downstream 324703 7113635 ~ 7126366 (-) True AMCG00010997
AMCG00010992 mRNA downstream 512843 6925770 ~ 6938226 (-) True AMCG00010992
AMCG00011008 mRNA upstream 22291 7529457 ~ 7551615 (-) True AMCG00011008
AMCG00011012 mRNA upstream 124899 7632065 ~ 7647012 (-) True AMCG00011012
AMCG00011013 mRNA upstream 226257 7733423 ~ 7742566 (-) True AMCG00011013
AMCG00011022 mRNA upstream 478115 7985281 ~ 7994619 (-) True AMCG00011022
AMCG00011023 mRNA upstream 490372 7997538 ~ 8026488 (-) True AMCG00011023
TU129184 other downstream 1702505 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2310613 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 2800963 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3265095 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 4031893 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 464458 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 1312385 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 1347739 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1727245 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 2094718 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile