RNA id: AMCG00011012


Basic Information

Item Value
RNA id AMCG00011012
length 609
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00011012
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7632065 ~ 7647012 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGAGGGTACAGAAATGGCCCTCATAAATTTAGAGCCATCAGTAGCAACAGCTCCAAACAGTCTGATGGCCCCTGTCAATGTCACCATCAAATCTCTGAAAGCCAATTCCGCGGTGGTGACATGGGACATCCCGGAGGGAGACATTGTCATCGGCTTTGCCATCTCACAGCAGAAAAAGGACGTGCGAATGCTGAGGTTCATCCAGGAGGTGAACACCACCACTCGCTCCTGTGCGCTGTGGGACCTGGAGGAGGACACAGAGTACATCGTCCACGTCCAGTCCATCAGCATGAGCGGACCCAGCCCCCCGAGCGACCCCGTCCAGTTCAGAACACCCAAGGAAGCTGAGAAGCTGGCCTCCAAGAGCAAAGACGAGGTGACGATGCAGGAGATGGGGAAGCCGACCACCCAGCTGAGAGCAGGAGAGCTCATCATCATTGTGGTGGTCCTCATCATGTGGGCAGGAGTGATAGCCCTGTTCTGCCGGCAATATGATATCATCAAAGACAACGAgccaaacaacaacaaggaCAAAGCCAAGAACTCATCAGAGTGCAGCACGCCAGAGCATCCCACGGGGGGGCTGTTGCGCAGCAAGGTATAA

Function

GO:

id name namespace
GO:0005778 peroxisomal membrane cellular_component
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K24486 FNDC4_5; fibronectin type III domain-containing protein 4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129541 lncRNA downstream 398751 7230954 ~ 7233314 (-) True G103666
TU129531 lncRNA downstream 442482 7189085 ~ 7189583 (-) True G103658
TU129532 lncRNA downstream 442482 7189085 ~ 7189583 (-) False G103658
TU129516 lncRNA downstream 460260 7115984 ~ 7171805 (-) True G103645
TU129388 lncRNA downstream 869926 6760139 ~ 6762139 (-) False G103556
TU129712 lncRNA upstream 129996 7777008 ~ 7779941 (-) True G103794
TU129760 lncRNA upstream 291125 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA upstream 323939 7970951 ~ 7975247 (-) True G103832
TU129800 lncRNA upstream 409469 8056481 ~ 8056683 (-) True G103859
TU129839 lncRNA upstream 520683 8167695 ~ 8167924 (-) True G103893
AMCG00011008 mRNA downstream 80450 7529457 ~ 7551615 (-) True AMCG00011008
AMCG00011009 mRNA downstream 124899 7451069 ~ 7507166 (-) True AMCG00011009
AMCG00011005 mRNA downstream 223369 7392972 ~ 7408696 (-) True AMCG00011005
AMCG00011006 mRNA downstream 241499 7365242 ~ 7390566 (-) True AMCG00011006
AMCG00011003 mRNA downstream 322644 7308639 ~ 7309421 (-) True AMCG00011003
AMCG00011013 mRNA upstream 86411 7733423 ~ 7742566 (-) True AMCG00011013
AMCG00011022 mRNA upstream 338269 7985281 ~ 7994619 (-) True AMCG00011022
AMCG00011023 mRNA upstream 350526 7997538 ~ 8026488 (-) True AMCG00011023
AMCG00011021 mRNA upstream 384165 8031177 ~ 8037256 (-) True AMCG00011021
AMCG00011029 mRNA upstream 414431 8061443 ~ 8065757 (-) True AMCG00011029
TU129184 other downstream 1883501 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2491609 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 2981959 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3446091 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 4212889 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 324612 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 1172539 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 1207893 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1587399 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1954872 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00013273 False 1119 mRNA 0.53 5 NC_007124.7 45786113 ~ 45811137 (-)
eurasian perch (Perca fluviatilis) TU269770 True 1287 lncRNA 0.42 1 NC_053130.1 35915469 ~ 35916755 (-)
tiger barb (Puntius tetrazona) TU269770 True 1544 lncRNA 0.41 2 NW_025048050.1 442605 ~ 461491 (+)
mexican tetra (Astyanax mexicanus) TU269770 True 12584 TUCP 0.40 8 NC_035919.1 20053157 ~ 20088987 (+)