RNA id: AMCG00011013


Basic Information

Item Value
RNA id AMCG00011013
length 2459
RNA type mRNA
GC content 0.54
exon number 8
gene id AMCG00011013
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 7733423 ~ 7742566 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGAAAGAAGACAGCTGCCCCAGTCACTTGAAGAAAGCAACCTGGCCAAAGGGCTATTCTTGAGAGAATCCATCGCTGAAGACATAACAAAGCCGAGCAACGCCATGCCGGCCGTGCTGCACCTCAGGACCCTGCACCGGTACAGCGTGAACCTGCGCGACCCCAGAGCGGCCCGGGCGGCGGGCAGGGAGCTGCTGGGCAGGGCGCTCTTTGATCGGAGTCTGCTGAGGCAGCTGGAGGACTGTGGCTGGCTCAACTGGTGCAAGCATGCCACCACCCTGGCGCCTCTGAAGAACGGGGGGAAAGGCAATAGCCTGCTGGACGCTGTTTCTCTGTACATGTGGGGGGTCCGGGACACTGACCTGGTGCTACGAACTGCTCTCTATAACACTATGCACCAAAATAGTCATGCTGACCTTCATATAGCAGGACACCGATGGCAGTCACTGGGAGGACACAGCGGTCACTATACTGCATGTAGGATGCCGATGTCCAACGAAGAATGGAAGGCGATTGTGAAGGTGGCAGATCCCAGATCAGAAGTTGAACCCCCCCCCATCATTTCAAACCAAGACATCTATCTCTTTGTCTTAGCCAACATTATCCGAAGGCCAATTATAGTGTTAGGGGGAAGCACAGAGGAAGCAATTGATGCTTCCTCCAATACCCCTGCCGGACCTGCTGGGATTTATCTGCCCCTCCTCTGGGACTCGGAGAAATGTTACGGATTTCCTGTTGTTCTGGGATGTGTGTATCCATTCTGCTGTTTCACGCCACTGCTCAGTAACAGCCCCTCAGCGCCCGAAATTGAAGCACTGCCCCTGGTAATAGACACTAAGCACAGAGTGAAGGAGCTGCCAGTACATTTCCTCCCAGAGCCTGACCAGAGCACCAAACAGCAATCTCTTAGAAAGTACCTGCATCTCAGTGACGTGTTTTTTGGAGACAGCAGTATCAGTGTCGCCAGGCTGGAGAGTCGTAACTTACCAGAAAACCTCAACTTAGTCCAGGACTATTTTAAGTTGGTGAACTATGTGTGTGCTCAGCTCAGTCATGAAATGCAGGGAGCTCAGGATATCTGCAGGGAGCAGGAAAACCAGGCATCCTCAACATGCTTCTCCATCACCAAAGACAAGTGTGCCACAGAGCACTGTCTGTACTTCGCCTCCAAGTACACCTGGCCATACTGCCACGAGTGTCGGGAGGCCTCCCACGGCCGAGCCCTGCCTCCGAAGCCGCCTTCTGCAAAACCCGGACACAGGGAGGGATGGAAGGACACGAGAGAGTACAGCTCGGGCAGCTGCTTCTACGGAGACCGACCCGCCAAAGTCCAACTTCCTGCTGGTCCGGCGTCTGCCCCCTCTGCACCTTTCTCCCCCGCACATCCGCCTGAGAGCAGAAGCCAGGGCTCCAGCTCCCAGCCCCAGAGGACTAACCCAAGCCAGGAACGCAAAAGCACCGTCCATTTTGACCCCTGTCAGCCATCGGGTAATGTGTCTCCACAGAGGACCGAGGGcaaagcagtcaggcctgtgccGTTGCATGATGAGCCCTGTGAGGGGACGGAGGCCTTGCTGTGTGGGAGATGCATAGCTTGCAAGAAAGAGACCCGGACCTTTAATGGCCTGTGTTTCAAATGCCTGCAGACAGAAGAGACGTCCAACCCCAGGGAGGAGGCTGAGCCGTCGCTGTCACCGAAAGTTCAGGACACTGGTTCCCAAAGTGAAAGGCAGTTCATGGAGAGGTGCATCACCCCAGGGTGCATGTACTTTGGCACCTTCGAACACAATGGTTACTGCACCTTGTGCTACTTTAACCAGGACAGAGCTCCGGCCTCTCGATCACAGGTCCGCCAGCAGGAGACCCCAGCAGACCCCCCCCCTCAGATCTCCTCCATTCTCCGTAAGATGCCCAAGTGCAGTGCTCCCGGCTGCAACATGCTGGAGACCCCTGGTTTTAACAGCTTCTGTGAAAAGTGTTTCCTGACCCACAACAAAGGCACGCTAGAATCAGAACTGAACTCCGGACTGACTCGAGCAGAGCCGTCTATCCAGAGACAGGCAAAACCAATTGATGGTTACTTCAGGCCCCCGGCCCAAGAGCCCCTGCAGGAGAAGATGAAACTGGCAGCCTGTGTGGAGAGGAGGACAGGCCCCACTGGCCCCACAGGAAACTCCCAGGCTGCGGGAGAACTAGACAGAAGACAGTGCAGAGACCGTGCATGTGTGAACTTTGGCAACACAAGATGTGATGGATACTGCAATCACTGCTATAAAAAGTATCGCAAGTAAGTTCAAACTGTCAGTCAAGGAAAGTAGAAGCCGCCTCACAGCACTTTAATGTCAactgtgtatatagtgtatatgtatatctataaatagttttatttttttaaagctttgtgCACAATTACTTCCCTGTAATAAAGTTTACCCTCCTCAACTTCAGATGCACC

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04658 Th1 and Th2 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129541 lncRNA downstream 500109 7230954 ~ 7233314 (-) True G103666
TU129531 lncRNA downstream 543840 7189085 ~ 7189583 (-) True G103658
TU129532 lncRNA downstream 543840 7189085 ~ 7189583 (-) False G103658
TU129516 lncRNA downstream 561618 7115984 ~ 7171805 (-) True G103645
TU129388 lncRNA downstream 971284 6760139 ~ 6762139 (-) False G103556
TU129712 lncRNA upstream 34442 7777008 ~ 7779941 (-) True G103794
TU129760 lncRNA upstream 195571 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA upstream 228385 7970951 ~ 7975247 (-) True G103832
TU129800 lncRNA upstream 313915 8056481 ~ 8056683 (-) True G103859
TU129839 lncRNA upstream 425129 8167695 ~ 8167924 (-) True G103893
AMCG00011012 mRNA downstream 86411 7632065 ~ 7647012 (-) True AMCG00011012
AMCG00011008 mRNA downstream 181808 7529457 ~ 7551615 (-) True AMCG00011008
AMCG00011009 mRNA downstream 226257 7451069 ~ 7507166 (-) True AMCG00011009
AMCG00011005 mRNA downstream 324727 7392972 ~ 7408696 (-) True AMCG00011005
AMCG00011006 mRNA downstream 342857 7365242 ~ 7390566 (-) True AMCG00011006
AMCG00011022 mRNA upstream 242715 7985281 ~ 7994619 (-) True AMCG00011022
AMCG00011023 mRNA upstream 254972 7997538 ~ 8026488 (-) True AMCG00011023
AMCG00011021 mRNA upstream 288611 8031177 ~ 8037256 (-) True AMCG00011021
AMCG00011029 mRNA upstream 318877 8061443 ~ 8065757 (-) True AMCG00011029
AMCG00011028 mRNA upstream 328280 8070846 ~ 8077484 (-) True AMCG00011028
TU129184 other downstream 1984859 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2592967 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3083317 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3547449 4169793 ~ 4185974 (-) True G103112
TU128666 other downstream 4314247 3416368 ~ 3419176 (-) True G102990
TU129762 other upstream 229058 7971624 ~ 8019522 (-) False G103832
TU129989 other upstream 1076985 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 1112339 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1491845 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1859318 9601884 ~ 9602741 (-) False AMCG00011084

Expression Profile