RNA id: AMCG00011021


Basic Information

Item Value
RNA id AMCG00011021
length 3999
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00011021
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8031177 ~ 8037256 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaaaaaagggcgtCTCTCCTTTCCAGTATCTCAACAAAGCTATAAAAATAATGGGAATGTGCGTCCTGCAGCATGAACCCACTCCACTCCTGCCTGCAGTTCACTCTTCTCCCCGTCCAGTGCAGCCGGGCAGCCGCTGGGGTTGCGCACACAGTCCACTTCAATAAGTCCGGGCCATCCGACATGTCCAGCAGTGCGCCGGCCATGGACTTCAAAGAGCTGGGGGGCGAGGAGGACTCCGGGGGCGAGCTGGAGGATCTGGACAGCGTGAAGGCGCTGACAGAGAAGCTGAAGCTGCAGACCCGGAGACCCTCCTATCTGGAGTGGAAGGAGAGGTTGCAGAGCCGGCCTTGGCAAGGGGACGCAGAGGCGAGTGGCACCGACACCACGGACAGCAGGCTGGAGCTGCCTTGGGGGGTGAAGGGCAGACCCCCCGACGACACAGTGAGGAACATCTGCGGTTTCGACACCCTGGACGATGCCCTGGACTGGCTGAGGAAAGAGCTGCGGGAGATGCAGGTGCAGGACAACCAGCTGGCCCGGCAGCTGATGAAGCTGCGGGGGGAGATCCACCGCCTGAAGGTGGAGCAGGTGTGTCACCGGCACAAGGAAATGCTGGACGACGCCACCTACGAGCTGGAGGAGTGCGGCGAGGAGTCGGACCTGCTGTGCGACATCCCGCTGAAGGCCACCTTCGCCCTCTCCATGCCGCTCAAGCACATCGGTCTCACCAAGATGAACATCAACTCCCGCCGCTTCTCCCTGTGCTAGCGCCGCGCCGCGCCCCTCCGTCCGCTCCCTCAAGTGGCTCCAGCTCTTTGGCTCCCTTCCTTAAGGGTGCCGTTATTTTCATTGGAACCTTCCGGTGTTATTTTGGCACCTTTTGCACCGTGCACTGACAAGACTGAGGGGCTCTACTTTTATTCTTTTCTCCTGTGAAAATGTTTGCTGCTTTATGTGTCTGCAGGTTACGGCTTGTTCTCCTTCCTGTGCCTGCCTGAAATTACGTGCTTTTATTTCACTGCACGTcaagagatttttttaaaattattttttgtacagttccttatagaaaacaaaccaaacgtGTCACCCACATCATGGTGGTGATGTACTGCACCACAGCCTGTCTGCGCTCTCTCTCTACCAGCTTGAGCTCTTTAAGCCGAGCTGCTGCCTGAGGCCTTGCAAGGAGCTTACCAAGCACATGTGGCTTAATATCCCAGAGCCTGGTTAGCTTTGTGCTGCTGAATGATGGAATCTGTGGAAGACTTGGAGAACTTGTCAGAGTTCCTGTACAAGTGCATCTCTAAGGGTTTAGAACAACAGGCTTAAGACCTCTGTGTGAAGCATGTTCCCTGCCACCGCCGATAACCCCCAGCATGCACACCACACTGCCTCTTATCAGCAGGAATTGTAGCCTTTCTACGTTTCCTCCAGGGCTGCTAGTGCACACGCCCCCAGCTTCTTCCACCCTGGAGTCTCGGAGAGTGTCTGTGTCACGAGCCTCCGACCACCTCTTTCCCGTTGGTGAACTGGATTcggttgcttttatttaaaggaCCTGTGTCACATAAATGGGCCTGAATAAACTGGCGGATAACACAACTGTGTTTCCATCCTGTAAAACCTCTAGgggggtatttaaaaaaaataaaaaaggaagaaatgtAACAGACTTTACTGAGGCCTTGCGTCTCCTCTGTATTTAACGGATCTTAAAAAAAGAGGATCTTATTGATTTGAAAGGGCAGAGGGTCTAGTGGGTGTAGTgatatttaatgaattattttggtatatttaacatttactcaggtataaaaaaaaggaaagcttaCACCTGGTTGTAAAAATCGTAATGTTTTATCACATTTGGAGAATGGAATGTAAAGAGATGTAATATTGTTTCTCtccactgtatatataggaGACCGAGCTCTGCTGCCTTTCCCCAGGCTTTATATATCCCTTCTCTTTGGACTTTGGCTCTGTTTTAAACCCAGGACAAGAGCCCCTGATAAATGATCAATGTTGTGCAAGTGGATGTGATGTCATAACTCACAATAATCGTGACTCATTATAAATTTGAAATCCAGCTTTAGTTCATAGGTCATTCATTTTAAGGGAAACTATATTCTCTCTTTTTTGGTTTACCTGGGCCACATGCAAACTATACACACTGATGGGTCTACCTGCTGTGACTGTGTTTGTAAAGCTGAAACAGCATTGTCTGTCAcattatattgttgttttgtctgGAGGCTTGAGAATTACAGGATGCAATTAACTATTTTCATTAAAGATTGCCTTGTTTATTAGCTCTGCATTTCATCATGTTCTTTGTGCTTCTAGCCAATCAGGGTTCATTTTAGTCTGATGGATGAAAGTCTCCTCTGGGGATTAGCTTTCGTGTTGCCCTCTACACCTTCCCTGCTTCCCATTAATACCAACAGAGGAGCAGTGGCTACCCAATGTATGCTGGTGCTTCACTCACCCCTCCCCAAATGTTTATTATAGTGTTGACTGCAGGAAAACTGCTCTGCAATTACCGTTTTTGGCATACATCTGCCccattcattttgctttttttaagtgtttgtttatgtattgctGTGAAATAATTCCATACtactataatttatttaattattatttccccattttgtatttaatttgaatgtgttgCTGGAAAAAGACTCATAGTatgtaaacaaaatcaatcatcctgttttttgttttgctttttctgctCTCAGCACTTTGAAAGCCAATGGGTTGACACTCAAACAAGTGTTAATCAGCTGAGAGCCAACAGATCTGtttgtgttgccaaagcatgctggagaaaaacaaacagctgaaaGGTAAATAAGCGCTGAGAGCTCCTTTGCTTCTACACTGCATGTTACACTTATCTGCCTGAGGTGCAGATTGCCTCCCTGCAGAGGTCTGCTGATGATATGGCTTATACTGAAATAACAAAGCAGGTTTTCTTGTATGGCACTCTAGAAACGTTGTGTCAGGATGGTGTCAGTGTAGTAATCCTGAGACCTCACTAaggggcctgggccttttagtgatatGGTAAGGTTGCTGCACTGTGGCATGGAAGACCGGGGTTTCGAGTCTCACCCAGGATGTTACATCAGCATCGGAGTTTGCTTTACAACAGGGGACTACAGGGCACCACTACCCAGTTCAAAGAGATGTGCATGACACCCAAGATGACATCCAAAGTCAAGGGGAAACTTGTAGTTGAGAGGAAGTGAAAAAAACAGGTGATGAAGAGAGATTGTCCCCCTGCaagtcacacacactcacctaagcTGTTACTCAGACAGCACAGTCCAGGCATTGTCTGCTTAAAACTGTTGTCACTACATCAGGAGAAAAGTGGAAACTTGCACGTCAAATCGAGACCTAATTATATTTAGGTGATGCCAGGAAAAttatgtttgcattgttttgcttATGTGACTTTTTCCAAACTACTAATTATCTACCTTGCGTGAGATGTACCATTGTCAATATGACATTGTGAACCCCAAACAGAAAGGACTTAGTCATCGATATTTAATGACTGTGTGACAATTATAGTGATTGCACTGGAAAAATAGTGCATAATATGAAATAGGCAATGtaagtaaaaatgtaacaatcaaTGCCTTTTCCTAGAAACTCAACTCcattaaactgaatgaaaaacagACTTCACTGAACGATTGAATCATAGCTTGACAAGCCAAGAATGGGTGACCTTAAAGCCTGTCCCAGTGCTCTGCACAGTAGTCTGCGAGATTCAAGAGATGCAATAATGTTAATAGTGTGTTTTATTACTGCTATTGAGCCACTGAACATCATAAAGCCTATCAAGGCCAGCTAAGCTGCAGAGGCATAAAACACAGTGACACTTTCCTATAGATAGCAATAATGGTATTGAGACTGACAGgactgtaaaatgtacagtgcCATTGCATATTCTTCAATATCTGTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129760 lncRNA downstream 4146 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA downstream 55930 7970951 ~ 7975247 (-) True G103832
TU129712 lncRNA downstream 251236 7777008 ~ 7779941 (-) True G103794
TU129541 lncRNA downstream 797863 7230954 ~ 7233314 (-) True G103666
TU129531 lncRNA downstream 841594 7189085 ~ 7189583 (-) True G103658
TU129800 lncRNA upstream 19225 8056481 ~ 8056683 (-) True G103859
TU129839 lncRNA upstream 130439 8167695 ~ 8167924 (-) True G103893
TU129846 lncRNA upstream 304107 8341363 ~ 8341588 (-) True G103900
TU129849 lncRNA upstream 305328 8342584 ~ 8342818 (-) True G103903
TU129887 lncRNA upstream 423674 8460930 ~ 8462662 (-) True G103929
AMCG00011023 mRNA downstream 4689 7997538 ~ 8026488 (-) True AMCG00011023
AMCG00011022 mRNA downstream 36558 7985281 ~ 7994619 (-) True AMCG00011022
AMCG00011013 mRNA downstream 288611 7733423 ~ 7742566 (-) True AMCG00011013
AMCG00011012 mRNA downstream 384165 7632065 ~ 7647012 (-) True AMCG00011012
AMCG00011008 mRNA downstream 479562 7529457 ~ 7551615 (-) True AMCG00011008
AMCG00011029 mRNA upstream 24187 8061443 ~ 8065757 (-) True AMCG00011029
AMCG00011028 mRNA upstream 33590 8070846 ~ 8077484 (-) True AMCG00011028
AMCG00011026 mRNA upstream 41122 8078378 ~ 8080975 (-) True AMCG00011026
AMCG00011024 mRNA upstream 45162 8082418 ~ 8090075 (-) True AMCG00011024
AMCG00011025 mRNA upstream 53705 8090961 ~ 8099615 (-) True AMCG00011025
TU129762 other downstream 11655 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 2282613 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2890721 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3381071 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3845203 4169793 ~ 4185974 (-) True G103112
TU129989 other upstream 782295 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 817649 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1197155 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1564628 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 1703877 9741133 ~ 9743785 (-) True AMCG00011086

Expression Profile