RNA id: AMCG00011024


Basic Information

Item Value
RNA id AMCG00011024
length 3503
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00011024
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8082418 ~ 8090075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCGCATTgagatttatttgtgttcatatGAGGATAAAGATCCTCCGATATCTGCAAGGTGCATGGACGATTGGACGggatttcaaaaatattaaacaagaaGCTGCCGGTCCGAAGTGCTTAACTAGTGTTGAATCATTTTTGGGATCATTAACGTTTATTTTTCCCAGATTTGTTTTGCAGCTCCAGTCTTTACGCCCCCCCTGCGTTCTCTGCCTTCCCTCTCAAACCGTTCAAAGCCGTGCCCAGGGGAACTCTGGGGGACATGGAGGACAAGCGAAAGAAGAGGAGCCCCAAGGTGTCTCTCGCCCAGCCCCCGCCGCCTCCTgtcaacccccgcaaactctctGTGCCCGCCAGTAAGAGCGCGTCGTTCTCCCTGGGCCTGCCCCAGCCGCCCTCCCCGAAGCCCAGGAGCAAGTTCAAGAGGTCGCACAAGGAGAAGGCCCGAGCCCCGCAGCCCGCAGGCCCGAGCAAAGTCAGCCAGTCCTCACCGCTCCAGCACTCCTTCCTCACGGACGTATCGGATGTGCGCGAGATGGAGGGGGGGCTCCTGAACCTGCTCAACGACTTCCACTCCGGCAAACTGCAGGCTTTTGGGAAAGTGTGTTCCTTCGAGCAGCTGGAGCATGTGCGTGAGATGCAGGAGAAGCTGGCACGGCTGCACTTCAGCCTGGACAGCCACGTGGAGGAGCTGTCGGAGGACCAGAGGAAGTCCGCCTCCGACCACAACCTGGAGCACCTGCTCTGCAATctgGAAGAGCTCAGCAACTCAATACAGAAGCTCCACTTAGCAGAGAACCAAGACGTCCCCAAGACATCTGCTTCCTGAAGAAATGGGCTGTGATGAAGAAAAGAACGGCTGAAAATGGAGAAGAGAAGGGCCCGGAGGGAAACGGACTTGCAGCTATCAAGATTATATTTCAATAGCATGAGAATCTGCCAATGCTAGGCAATGTATGCAACGACCTGTAACACAAAAGCTATTGACAAAGCACAGATACTCTCTTATCAGGCCGTTCTTAGTAGATATTTTTGCAAACCATTTGTATACTAGATGGTTTCAAAATAATGACCTCACCAAGTTAATTATGAATACTCGTTTCACCTATTTTGCATCAGTTGCCGACACAATTGTCAAAGCATCATTCCAGGGAAAAATTTGATGGTCGTGTTAGTAGAAAAAGGGAGCAGAAAGAGACAGGGAACTGGTTGTTCTCTGGACAGTTAAAGCTTAAAGACCAGCTGTTGGTCACATTCTCGATCCATCCAGTATCTCATTGCTGCAAGCTGTGATGAAGCACATAGCTGATGCCTTATTCTAAAAGAAGCCTTTGGGTTAAAGTGAAATCCAGGCTCACTCTACCTTGACCGCAAAGCATTTTTACAGAGGTACAATTCAAGGCTCTATTTGGTAATTTATAGAGtcattatatatactatataggGCCCAGTGTAGATGTAAGATAGACTTTACACTTTTAGTAGAGCTCTTCTCAGGAATGCTTTGTAAACATCTATTTGTCTACTATATTCAGGATACTTGTTTGAAAGATCCTATTGTGCATGACTGACTGCACATGGTTTGGAGATTATCTGTTCAAATCCTTGACATGATGTTTACACATTAAGGGAGACGTTGTGGTTTTGTTGTAGGCGGGGCAGTATAATGTGTGTTCTTTTGTGGGTTAAAACTTTAAAGCAGATACTTAGGACTTTGAAATATGAGTAGATGCTCCGTGAAGGTGGAATGCGCATGGTATGTGTAGAGTACAGacagtttgttattttaaatggagcGTGAACGTGACAGAATAGTGACTTGCGTTCAGTGGGAGTAATGTGGATAATTGGATATACTGTGAAACACTTCAGTAGGTGCTTTAAAAGATTCATATTATTTGACCACTGTAGCTGTTATCatcctttaaacaaacaaacgtctGACTTCTCGCCAATAATgtagcacattttatttttaaattgggtGTGCTATTAGCTTTCCATGAAACTGAACAAACTGAGACTGatggaagaaaatgcatttgtggCCAATGGgcatcatttcattttctgcagggcataaaatattaatttgcccTTGCTATTTTTAAGCctattaaaaaacactttaaatatctATTATGCAATAGGCCTTTGTGCTGTTAAACCAGTtaagcacaaaaaaaatgtatttttcttcttatgaGAGAAAATGCACAGTAACAATATGGATATCAAGAGCCTTctgattgtgtttaaaaaaaattgaatgttcCTGGTGAAAATGATATGAACAGTCAGTGCTCAAGTCAGACATCTTGCATCATCCTTAaactaatatgtatttaaagggATTCATATTAAGTATTGTCTGTCCTTTTATTTACACGTGGAGATTTGAAATGGTATTTTGCTTCTTCTTCATAGCTGCCATTGTATCCTGGTCAaagtatttactgtatttgacTGATTATTATGTTATACGTTTGTTACttgtactgtaatattttaCTAGAAAACATGCAGAAGACTTTAAAAAAGTCGACATTTTTCACTGCACATCCCTCAGGCTGGAAGCTTGGCTGTTTAAAATCGAGAGTGTGCTGTAATTCTGTACCCTCTGAAGGAAAGACATTGTTGGCAGGCTTGAATTGCTGCCTGCTGTAAATTATTTAGTGTTACTAACCTTTAAATGGTGACAGTGTGATTTTGTGAAGTTTGAAGTTATACAAAACTGACTTCCCATTTTTTGGAAGTCGAAGTAAAAGTTAAACTGTGCAGAACTACCAGGACACAGCGTGGGCAGGGGAGAGTGacttttatgtctttatttttgttgttgttgtttgtatgtttgattgtttttcactaaaaactatttttgtagATTGACATTTTCACTACATCAGAAACCTTTGAAAAGTGTCCTGTTAATCTGTTACATATGTCATCTACAGGAAACAAGTACTTTCTATTGAGTACCGATATGTAGGGCTAGCTGTAATGCAGATTTAAATAGGATTAGAGCCATGGCACAAGCCTGTTTATACTAAGGCAGCTATGCTTTGAAATCTGGTCTTTATGTTCTAATATGTTTGCAGAATTTTCTGACAGATACTGGGAGATTAAGTACTGTATCTAAGACTTACTATTGTAACCCAAGCAAAAGACTTCCACATTAGACAGCAAAGAAGTCTAATATGTATCATAGTAttctaaaaaaaacagattcaattaggaaacaaataattttgGCTTCCAGCGTATTATGTGATGTTACTTATTCAGTAGTTGAGTCCTTCTATAATTGCGTTGCATAGATCTCAGTTTTGTTAgttagatttaattattttagtgtgAAGAAAATGACCCCAAAGAGGCTTTCCACAATTGTACTAATAGCTCCTAACCACTCATGTCACTCTGTAATTAACATTATAATGTTGTGTTTTCTAATTTAAAGggtttatattcattttaaatcaatttaacaaaaata

Function

GO:      GO:0042384

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129800 lncRNA downstream 25735 8056481 ~ 8056683 (-) True G103859
TU129760 lncRNA downstream 55387 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA downstream 107171 7970951 ~ 7975247 (-) True G103832
TU129712 lncRNA downstream 302477 7777008 ~ 7779941 (-) True G103794
TU129541 lncRNA downstream 849104 7230954 ~ 7233314 (-) True G103666
TU129839 lncRNA upstream 77620 8167695 ~ 8167924 (-) True G103893
TU129846 lncRNA upstream 251288 8341363 ~ 8341588 (-) True G103900
TU129849 lncRNA upstream 252509 8342584 ~ 8342818 (-) True G103903
TU129887 lncRNA upstream 370855 8460930 ~ 8462662 (-) True G103929
TU129971 lncRNA upstream 716395 8806470 ~ 8811022 (-) True G103999
AMCG00011026 mRNA downstream 1443 8078378 ~ 8080975 (-) True AMCG00011026
AMCG00011028 mRNA downstream 4934 8070846 ~ 8077484 (-) True AMCG00011028
AMCG00011029 mRNA downstream 16661 8061443 ~ 8065757 (-) True AMCG00011029
AMCG00011021 mRNA downstream 45162 8031177 ~ 8037256 (-) True AMCG00011021
AMCG00011023 mRNA downstream 55930 7997538 ~ 8026488 (-) True AMCG00011023
AMCG00011025 mRNA upstream 886 8090961 ~ 8099615 (-) True AMCG00011025
AMCG00011027 mRNA upstream 19248 8109323 ~ 8120492 (-) True AMCG00011027
AMCG00011030 mRNA upstream 42954 8133029 ~ 8149161 (-) True AMCG00011030
AMCG00011031 mRNA upstream 238320 8328395 ~ 8328942 (-) True AMCG00011031
AMCG00011035 mRNA upstream 274645 8364720 ~ 8380701 (-) True AMCG00011035
TU129762 other downstream 62896 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 2333854 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2941962 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3432312 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3896444 4169793 ~ 4185974 (-) True G103112
TU129989 other upstream 729476 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 764830 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1144336 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1511809 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 1651058 9741133 ~ 9743785 (-) True AMCG00011086

Expression Profile