RNA id: AMCG00011025


Basic Information

Item Value
RNA id AMCG00011025
length 4418
RNA type mRNA
GC content 0.44
exon number 11
gene id AMCG00011025
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8090961 ~ 8099615 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTCTCCACACTTACATAACCGTTTACTATTCCTATCTCTAACCTTTCTTTCCCGTAAGCAATTTGTGATGTAACAATCCTtgaaagtttaatttgaaaatcaatATACGCCATATGCTTAGTATTTACCAATTCATAAATACACAGCGAATAGTTCTGAGAACTCCCTCCTCTCTGTCAGTCACTGCAGTCCTTTATATTTATCCACAGCATTTTCATGATAGGACCTTGAACGTCTGGGAGTTGCTACACTGTCCAATTGTTCTCCACTGCTGTAGATGGATTGGAGCAGCAGGTGCCGTGATGAAGAAACAGGACAGCGAGGGCCAGGAACAGCAGAGCGGAGTTATTGAGGCTCAGACCTGCAAGGAGGAGGCCGGCCTGGGGGAGAGTAGGGCTCCTGAGGGTACCAAGAGTCAGGAGCCTGCGGGCAATTCCCAGCCCAGCACTCTGCCTCCAGATGTCCCAGCCAAAAACGATGCAGAGGACGCGTCCGGTGAGGCGAGCGGCAGTGATGTGTCGGAGGAGCTGAGCCGGCAGCTGGAGGACATCCTGAACACCTACTGCCAGGAGGACAGCGCGGAGGACAGGCCGCAGCCAGAGCCGCCTCGCAATGGAGAGCCCGAGCCCGAGATCGACACTCTGGAGGTCAACGGCATCGCAGACAAGGAGGATGTCAAAGTGGAGGAACCCAAACTGAATGGAGACATCACGGACAAAGACCAGAAGAAGCcccaggagaagaaaaaagtcaaGGGTCTCGgGAAGGAGATCACACTGCTGATGCAGACGTTGAACACCCTGAGCACACCGGAGGAGAAGCTGGCTGCTCTCTGCAAGAAATACGCAGAGCTGCTGGAGGAGCACAGGAACTCGCAGAAGCAGATGAGAGTCCTGCAGAAGAAGCAGAACCAGCTTATTCAGGAGAAGGACCACCTGAGGAACGAGCACAGCAAAGCCATCCTGGCGCGCAGCAAGCTGGAGAGCCTTTGCCGAGAACTGCAGAGGCACAACCGCACGCTGAAGGAGGACGGCATGCAGCGCGCCCGcgtggaggaggagaagaggaaggaggTGACGTCACACTTCCAGGTGACCCTGAATGACATCCAGGTGCAGATGGAGCAGCACAACGAGCGCAACGCCAGCCTGCGGCAGGAGAACATGGAGCTGGCGGAGAAGCTGAAGAAGCTGATCGAGCAGTACGAGCTGCGGGAGGAGCACATCGACAAGGTCTTCAAACACAAGGACCTGCAGCAGCAACTGGTTGATGCCAAACTACAGCAAGCCCAGGAGCTCCTGAAGGAGTCGGAGGACCGGCACCAGAGAGAGAAGGACTTTCTCCTAAAGGAGGCTGTGGAGTCCCAGAGGATGTGTGAGCTGATGAAACAGCAGGAGGTTCATCTCAAGCAACAGTTGTCACTGTATACAGAAAAATTTGAAGAGTTTCAAAACACACTTTCCAAAAGTAATGAAGTGTTCACAACGTTTAAACAGGAGATGGAGAAgATGACTAAAAAGATCAAGAAGCTGGAGAAGGAAACCACAATGTACCGCTCGAGGTGGGAGAGCAGCAACAAAGCGCTGTTGGAGATGGCTGAGGAGAAAACCCTCCGTGATAAGGAGTTCGAGAGCCTGCAGGTCAAGGTTTTGCGCCTGGAGAAGCTGTGCCGAGCCCTGCAGATCGAGCGCAACGAGCTGAGCAAGAAGGTTCAGTGCCTGAGCAAGCAAGGGGACACGGGGCCCCAGGGACCGCACACTGACTGCAGCGCCAGCCTCCCAGACCTCTCTGACACAGAGACTCCTCCCGTGCCCTCAGAGTCCTGCTCAGAGCTGTGCCACTGTGCCGCAGAGTCGGAGAAAGTGACCGCGGGGGAGGCAGACATGCAGGCCTGCCAGGAATAGTCCCGCATCTCTACACCTCACGCAGTACCCACAGAAAGGGTGTGTGTTCTGGTACAGTGTGATTTAGTTTGGTTTTGGGTGAACGTATTCTCACCAGGGAGGATCATTCTTTCACAGAaacgtattattattttattgttttgtttattatttacacaaacaGTCCCTGCAGAAACCAGCATAATGTTCAAGGAGCTGCCTTTATTGTACAAGCACTGAGATGCACTTAGTGTAATTTTTAGTCACATGTGGCTCCAGTGCAGAattttcatcaaaataaagCCTTAGAAAACATTCTAGAATTTCAGAGGAATTCTTTCCCTGTCCCTGCCCGTTTCCCCAGTTTTGTCATGTCACTTTAGAGGGAGATTGTTTTCTTCAGCTGAATGTTGTGATGacccttttttctgtttgcacaGTGCATAAGCAGAAGGTGTGCCAAGTGCTACTGTCCCTACTATCTATCTGCTGCCTTAACGCGTGTTTGTGCAGAGCTGCAGGGTGTATGTGGTTTGTAGTTCTGTGGAACTTAACTatcaattttttatatatatacacatctgttTAAAAGTTAACTGTTACTAATAATTTGTAGTCCTAACCACGGACAAGGATCTTGCTGAAATTTTACTGTGGAAATAACTAAAGGCTTTTGGATTTGAGGGACAGTAGAACAGCAGAGATGTTTGAATGGGTATTAAAGAGTTTCCATTCTCGATCCGTATATTTTAATGTGCGAGTACCTTACATTGCTCATTCTACCCGAGTTTTGCACCACTCTCTAATTGTAAGCTTCGGCTACAGTGTAAGAATGtattctttcctctttttttttaaatgagatctgTATGTGCAAGAAAACTGACATATACGGACAAGTATATTTCTTTGGGGTtttcctgtattattattattattattattattattattattattatcagagtAGTTCTATAATTAAACCATAAGACCCACAAAATTAGAAGTGTGTACTCCGAGCATCATTACAAAGGAATACAAGCAACATTCCTGATAAAGGAtgcagaaaaaagaaactggaaatctatttgttttccctccctctttcaTTTCAGCATAGCCTGTTGGTAAAATTCTGGAGATGCTTTCCTTCACATTAATGCATCCCCATACGGTTCCTCCCGCGAAGCGTTCTAGAAGTGCCAGGTTTCCACTGACTGCTGTGTGCTTGTGCAGGGCTTTAATGAATTGTACAGGACTTCACCACTGTACCAGTCTGTCATTGACCACCTGACCTTATTAATGCTCAGGCAACTTCGAATGTTCAGTGACCAGTTTTGAATGTGGCATTTTATATGCATTATCACTATTTCTTTGAgatcaaaaaatgtaatgaatatttgtttttgtttttatttgtgtatggaGTGATAATCATTGATAGgttgtattatttcagttaaaaactAATCTAAGCAGGAaaaaggtgttttgtttttttcttaccttggaatttgttgtatttgtttttcacgcTAGACAGTTGCAGCTTGGGCAAAACAAAGGATAGAGAAACCCAGGCCTTTTACTATGCAATCAAATTCACtcattccatttttatttattttttaccttgaaGATTCTTGCTACACAGAAAGGGTATTTACAGTATACGTCACTGCATGTGGATCTTCAGTAATTGCTTCCCCTGCCCAACTGATTTCCAGTATATCTGTAAGCAGCAGTAAATGTCTGTAGTAAATGTATCCAGCTGCCACATGCAGAGACGCAGCACATCTGGAGTAATAGTAggaggttttgttttctaaaatttctcattttcattttttatttttagaatgatTTTGTGGAATGGTTAAACTGGGAAGCTACTCGGATTACAGTGAGTTCTGGCATAGGATATTCCTGGAAATGTGTTAAGGGAGAGGTTGATTCAGTTAGCACTGTTCTGTGTCCAACACGCTGtcttaaagattaaaaaataaatgtgcaggtTGAGAAGTGTAAATAGAGGTGTTATATAGATATAGAGGTATCGTCTGGTTATGAATGAGACACTAATGTTTTTCGCATGAATACATTCGATTGACTAAACAAAACACTCTTATCATGTCCTAGGGGAATATTTTCCATGCGTGTGGATTTGTATTGGGATGAAATCATTGTAGGCTGGTTAAATCTGTGCAGTCCCACAGTTTATGCTGCAGAAACTTCCTATAggttttttacaattttacacgCCCTTAAAGATGGAGTCCTTAATGCACTTTTTACACCGTACTTATGTGTGAGTGACAGTCACTGTATTTTATCTGTTAAGGCCCCACTCTCTTGGctaattttatatttccttcATATAGTCAACACAAGGTCTGTTTAATCGGGTACCAAAGATTGCATCGCACACAtacttttcatgtttgtttttgtgttctgtatgtttttcctttgtcattTTCATACTGTCTACACGTTTCtttaggttaaaaaaataataaaatatttgactTTA

Function

GO:

id name namespace
GO:0019905 syntaxin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129800 lncRNA downstream 34278 8056481 ~ 8056683 (-) True G103859
TU129760 lncRNA downstream 63930 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA downstream 115714 7970951 ~ 7975247 (-) True G103832
TU129712 lncRNA downstream 311020 7777008 ~ 7779941 (-) True G103794
TU129541 lncRNA downstream 857647 7230954 ~ 7233314 (-) True G103666
TU129839 lncRNA upstream 68080 8167695 ~ 8167924 (-) True G103893
TU129846 lncRNA upstream 241748 8341363 ~ 8341588 (-) True G103900
TU129849 lncRNA upstream 242969 8342584 ~ 8342818 (-) True G103903
TU129887 lncRNA upstream 361315 8460930 ~ 8462662 (-) True G103929
TU129971 lncRNA upstream 706855 8806470 ~ 8811022 (-) True G103999
AMCG00011024 mRNA downstream 886 8082418 ~ 8090075 (-) True AMCG00011024
AMCG00011026 mRNA downstream 9986 8078378 ~ 8080975 (-) True AMCG00011026
AMCG00011028 mRNA downstream 13477 8070846 ~ 8077484 (-) True AMCG00011028
AMCG00011029 mRNA downstream 25204 8061443 ~ 8065757 (-) True AMCG00011029
AMCG00011021 mRNA downstream 53705 8031177 ~ 8037256 (-) True AMCG00011021
AMCG00011027 mRNA upstream 9708 8109323 ~ 8120492 (-) True AMCG00011027
AMCG00011030 mRNA upstream 33414 8133029 ~ 8149161 (-) True AMCG00011030
AMCG00011031 mRNA upstream 228780 8328395 ~ 8328942 (-) True AMCG00011031
AMCG00011035 mRNA upstream 265105 8364720 ~ 8380701 (-) True AMCG00011035
AMCG00011036 mRNA upstream 343700 8443315 ~ 8452241 (-) True AMCG00011036
TU129762 other downstream 71439 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 2342397 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2950505 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3440855 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3904987 4169793 ~ 4185974 (-) True G103112
TU129989 other upstream 719936 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 755290 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1134796 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1502269 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 1641518 9741133 ~ 9743785 (-) True AMCG00011086

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000054_08695322_08702750.mRNA True 2420 mRNA 0.46 11 CI01000054 8695322 ~ 8703309 (+)