RNA id: AMCG00011028


Basic Information

Item Value
RNA id AMCG00011028
length 1182
RNA type mRNA
GC content 0.53
exon number 10
gene id AMCG00011028
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8070846 ~ 8077484 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCTCGAATGGGACAGTGCTCCCACTGGCAAAGAATGTGGTGGTTTACAAAAACGGAGACCCCTTTTTCCACGGGAGGAAGTTTgtggtgaaccagcgacagatTTTGACTTTCGAGTCCTTTCTGAATGAGGTGACACACAACATCCAGGCCCAGGCGGCCGTGAGGAACCTGTACACCCCGAGAGAGGGGCACCGCGTGAGGGAGCTCGACGATCTACAGAATGGCAGCCAGTATGTGGCTGCTGGCTTCGAGAAGTTCAAGAAGCTGGACTATTTGAACCCAGGGGCAAAAAAGCCAGCCGCTAACCGAAAAAGTGAAGGAATACAGATTAGAACAGTCTATCGACTTAATGTGTCTGCGAAATGGAGGAAGACGATCCAAATGCCATCTGTAATCCATGTGTTTCGGAATGGGGACCTGCTCTGCCCCCCGTTCAGGCTCATCGTGCCGCGAAACGCCCTCCAGGACTGGGAGAAAATCCTCAACATGGTGACGGAGAAAGCCAACCTGAGGACAGGTGCTGTGCGCAGGCTCTGTACTCTGGAGGGGGAGACTGTCTCTTCAGGTGAAAATCTGGAAAATGGACAGTACTACGTTGCAGTGGGAGCAGAGAAGTTCAAGAAGCTTCCATACGTAGAACTCCTGGTGCCCAAAGCCCCATCACACAACCTCAGaaaccACCCGGGGAACAGACGCATAAGAAAGAAACACGAGTACAGGAAGCCGGTTAGTGTTCCGCAGGACGGGTACAGTGACTCGGCCCTAATGGACTCTCCAGAGCAGtcAGATGAGCGACGGGTGAGGTCGACAGAAGATGGGTTGGGGAATCCAGTCCCTTCCAAGGCTGTTCGCAGGAAACTGGGGAAAACTGCCAAGGAAGAGGACACCATCTTCCATGCCAGGCCGGTCAGGGTCCGCAAGAACAGAACCAACCCCCAGCCTCCTCCACCCAGGCATGAAAATGTTGTGCACTCAGTTGTGTGCATGCCGATGGACTGTCATGCCTGTGTTGCAGAGGAGGCGggtgtttttaaaggaaaccaGAAGAGGAGGGAGGTGCAGGGAGCAGCAGAGGTGGCTGAAGACGAGAACACAGCTGTGGAGTTTCCTGTGGATCAGAGAGTAGCAGAGACGGTGGAGGATGAAGTCATTGAGAGAGATCTACGAGAAAACAAG

Function

GO: NA

KEGG:

id description
K23405 DCDC2; doublecortin domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129800 lncRNA downstream 14163 8056481 ~ 8056683 (-) True G103859
TU129760 lncRNA downstream 43815 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA downstream 95599 7970951 ~ 7975247 (-) True G103832
TU129712 lncRNA downstream 290905 7777008 ~ 7779941 (-) True G103794
TU129541 lncRNA downstream 837532 7230954 ~ 7233314 (-) True G103666
TU129839 lncRNA upstream 90211 8167695 ~ 8167924 (-) True G103893
TU129846 lncRNA upstream 263879 8341363 ~ 8341588 (-) True G103900
TU129849 lncRNA upstream 265100 8342584 ~ 8342818 (-) True G103903
TU129887 lncRNA upstream 383446 8460930 ~ 8462662 (-) True G103929
TU129971 lncRNA upstream 728986 8806470 ~ 8811022 (-) True G103999
AMCG00011029 mRNA downstream 5089 8061443 ~ 8065757 (-) True AMCG00011029
AMCG00011021 mRNA downstream 33590 8031177 ~ 8037256 (-) True AMCG00011021
AMCG00011023 mRNA downstream 44358 7997538 ~ 8026488 (-) True AMCG00011023
AMCG00011022 mRNA downstream 76227 7985281 ~ 7994619 (-) True AMCG00011022
AMCG00011013 mRNA downstream 328280 7733423 ~ 7742566 (-) True AMCG00011013
AMCG00011026 mRNA upstream 894 8078378 ~ 8080975 (-) True AMCG00011026
AMCG00011024 mRNA upstream 4934 8082418 ~ 8090075 (-) True AMCG00011024
AMCG00011025 mRNA upstream 13477 8090961 ~ 8099615 (-) True AMCG00011025
AMCG00011027 mRNA upstream 31839 8109323 ~ 8120492 (-) True AMCG00011027
AMCG00011030 mRNA upstream 55545 8133029 ~ 8149161 (-) True AMCG00011030
TU129762 other downstream 51324 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 2322282 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2930390 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3420740 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3884872 4169793 ~ 4185974 (-) True G103112
TU129989 other upstream 742067 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 777421 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1156927 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1524400 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 1663649 9741133 ~ 9743785 (-) True AMCG00011086

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000012_07368295_07372257.mRNA True 1052 mRNA 0.50 9 CI01000012 7368295 ~ 7372257 (-)