RNA id: AMCG00011030


Basic Information

Item Value
RNA id AMCG00011030
length 1945
RNA type mRNA
GC content 0.50
exon number 10
gene id AMCG00011030
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8133029 ~ 8149161 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGGAGTGTTGCATTTCAGCGCCAAATTCGGGCCTCCATCCATCCACCCACCCTCTTAAGCAGGAGGTGTCGGAAATTCACCTCCACTGGGAGCTGGACTGCTTCCAGCCAGATTGGTAACCTGCAGGGACACCACGAAACAGGAGCCTACCTGCTCCCCTGCACAGCGGTGGAGGCTTTTGGCTGTAAGTGGAGTGAAAGGGGACACTTAAGTTTGCCAAAAGCAGGGAGCAGTGGCCTATTCGGGAATGGCAGGCGGAAGGAGAGGGCCAAACCGGACGTCCTACTGCCGATCGCCCCTGAGAGTGGCTCGGGTACAGGGATCTCCAGCCCCCCCCTTGCGGCCCAGACGGTTGTTCCCCTGAAGCACTGCAAGATCCCAGAGCTGGCCATGGACAGCAGCGTCCTGTTCGAGCTGCACCTCTTCTTCTGCCACCTCATTGCGCTGTTCGTCCATTACATCAACATCTACAAGACGGTGTGGTGGTACCCTCCCTCACACCCCCCCTCGCACACCTCGCTGAATTTTCACCTCATTGACTACAACTTGTTGATCTTCACTGTCATCGTGCTGGCTCGCCGGCTGATCGGAGCCATTGTGAAAGAGGCCTCTCAGAGTGGTAAACTATCATTCCCTCAATCCATCTTCCTGGTGACGGTGCGGTTTGCAGTCCTAACCGGGACTGGCTGGAGTCTGTGTCGATCCATGATTTACCTCTTCCGAACGTACTCTGTCTTAAACCTGCTGTTTCTGTGCTACCCATTCGGGATGTACATCCCCTTCTTCCGTCTGAATTGTGATTTTCGGAGGTCCAGCCCGCTCTCCCCCGTCACCAGCATTGGGTCCAAGGAGGGGGGGGTGATGGCCGGTAGGGGGAAGGACTACCTGACTGTGCTGAAGGAGACCTGGAAGCAGCACACCAGCCAGCTGTACGGGGTCGAGGTCATGCCCACACACGCCTGCTGCCTCTCGCCGGACCTCATCCGCAAAGAGGTGGAATACCTGAAGATGGACTTCAACTGGAGGATGAAGGAGGTCCTCGTGAGCTCCATGCTGAGCGCCTACTACGTGGCCTTCGTTCCTGTCTGGTTTGTCAAGAACACGCAGTACTATGACAAGCGCTGGTCGTGTGAGCTCTTCATCCTGGTGTCCGTCAGCACTTCTGTGATCCTGATGCGGCACCTCCTGCCCCCACGCTACTGCGATCTCCTGCACAAAGCTGCTGCCCACCTGGGCTGCTGGCAGAAGGTGGATCCCTCACTCTGCTCCAACGTCCTGCAGCACCTATGGACAGAGGAATACATGTGGCCACAGGGAGTCTTGGTAAAACACAACAAGAACGTCTATAAAGCGACGGGTCACTACAATGTAGCAGTTCCTTCAGATGTGTCGCATTATCGATTCTATttttTCTTCAACAAGCCTTTACGAATATTGAACATCCTCATCATTCTAGAAGGGGCAATGATATTCTACCAGCTATACTCCTTAATATGTTCAGAAAAATGGCACCAAACAATATCACTGGCTTTAATTCTATTCAGTAATTATTATGCTTTCTTCAAATTACTCAGGGACAGGATAGTCCTAGGGAAAGCATATTCCTATTTGTCAAACAGCACCTCTGAccagaaattaaattaagttattgTTTGCCATGGGTTAACTTTCAAATATGCCAGAgagctttgtattttttctacaaatgtgttgttttcttttgttgttgatgttgtttctgttcttatcttccataataataataaaaaaacatatttttgtattcccttAAAGAGAAGACTTCCTTTCTTCCTCAAGCTGTATAAGATGTGTCTATGAATgtaactgtgtgtatgtatcctGAAGGTATTCACAGCACTGGCTGGTACAAGTGTTTTGAATATTTCTTTgcggaaaaataaaaatgatctgaATGAAAAAA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129800 lncRNA downstream 76346 8056481 ~ 8056683 (-) True G103859
TU129760 lncRNA downstream 105998 7938137 ~ 8027031 (-) False G103832
TU129758 lncRNA downstream 157782 7970951 ~ 7975247 (-) True G103832
TU129712 lncRNA downstream 353088 7777008 ~ 7779941 (-) True G103794
TU129541 lncRNA downstream 899715 7230954 ~ 7233314 (-) True G103666
TU129839 lncRNA upstream 18534 8167695 ~ 8167924 (-) True G103893
TU129846 lncRNA upstream 192202 8341363 ~ 8341588 (-) True G103900
TU129849 lncRNA upstream 193423 8342584 ~ 8342818 (-) True G103903
TU129887 lncRNA upstream 311769 8460930 ~ 8462662 (-) True G103929
TU129971 lncRNA upstream 657309 8806470 ~ 8811022 (-) True G103999
AMCG00011027 mRNA downstream 12537 8109323 ~ 8120492 (-) True AMCG00011027
AMCG00011025 mRNA downstream 33414 8090961 ~ 8099615 (-) True AMCG00011025
AMCG00011024 mRNA downstream 42954 8082418 ~ 8090075 (-) True AMCG00011024
AMCG00011026 mRNA downstream 52054 8078378 ~ 8080975 (-) True AMCG00011026
AMCG00011028 mRNA downstream 55545 8070846 ~ 8077484 (-) True AMCG00011028
AMCG00011031 mRNA upstream 179234 8328395 ~ 8328942 (-) True AMCG00011031
AMCG00011035 mRNA upstream 215559 8364720 ~ 8380701 (-) True AMCG00011035
AMCG00011036 mRNA upstream 294154 8443315 ~ 8452241 (-) True AMCG00011036
AMCG00011034 mRNA upstream 314053 8463214 ~ 8464498 (-) True AMCG00011034
AMCG00011041 mRNA upstream 399672 8548833 ~ 8555531 (-) True AMCG00011041
TU129762 other downstream 113507 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 2384465 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 2992573 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3482923 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 3947055 4169793 ~ 4185974 (-) True G103112
TU129989 other upstream 670390 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 705744 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 1085250 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1452723 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 1591972 9741133 ~ 9743785 (-) True AMCG00011086

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012058 True 1857 mRNA 0.46 9 NC_007124.7 33268657 ~ 33281310 (+)
grasscarp (Ctenopharyngodon idella) CI01000012_07388341_07401600.mRNA True 1530 mRNA 0.49 9 CI01000012 7388341 ~ 7401756 (-)