RNA id: AMCG00011033


Basic Information

Item Value
RNA id AMCG00011033
length 2781
RNA type mRNA
GC content 0.46
exon number 12
gene id AMCG00011033
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8452328 ~ 8460860 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCGAAGGAGCTCACTGGCTGGACAAAGAGCTGCtcgtctcttttttttttattttcccgttttgttttctgctgcgGTTTGTGCTCCGATACGGCATCATGGCCGATAAAGAAGCAGCCTTTGATGATGCTGTGGAGGAGAGAGTGATCAATGAAGAATACAAGATCTGGAAGAAGAACACCCCCTTCCTGTATGATCTGGTGATGACCCATGCCTTGGAGTGGCCCAGTCTCACCGCACAGTGGCTGCCCGATGTCACCAGACCTGAGGGGAAGGACTTCAGTGTACACCGCCTGGTCCTCGGCACCCACACATCGGACGAGCAGAACCACCTGGTCATCGCCAGCGTTCAGTTGCCCAATGATGATGCCCAGTTCGACGCCTCTCATTACGACAGTGAGAAAGGAGAGTTCGGTGGTTTTGGCTCTGTGAGCGGGAAGATTGAGATCGAAATTAAGATCAACCACGAAGGAGAGGTGAATCGTGCCCGCTACATGCCCCAGAATCCCTGCATTATCGCTACCAAAACCCCCACCAGTGACGTGTTGGTGTTCGACTACACAAAACATCCCTCCAAACCAGATCCCTCTGGCGAGTGCAATCCAGACCTGCGTCTGAGGGGACACCAGAAGGAGGGCTATGGTCTGTCCTGGAACCCCAATCTGAGCGGATACCTGCTGAGTGCCTCAGACGATCACACCATCTGCTTGTGGGACATCAGTGCCGTTCCCAAGGAGGGCAAGGTGGTGGACGCCAAGACCATCTTCACCGGGCACACAGCTGTGGTGGAGGACGTGTCCTGGCACCTCCTGCATGAGTCACTGTTCGGCTCAGTCGCAGATGACCAGAAACTCATGATctGGGACACCAGGTCCAACAACACGTCCAAGCCCAGTCACGCAGTGGACGCCCACACTGCAGAGGTCAACTGCCTCTCCTTCAACCCCTACAGCGAATTCATCCTGGCCACAGGCTCCGCAGACAAGACTGTTGCTCTGTGGGATCTGCGCAACCTGAAGCTGAAGCTGCACTCGTTTGAGTCTCATAAAGACGAGATTTTCCAGGTTCAGTGGTCTCCTCATAACGAAACTATCCTGGCATCGAGTGGCACAGACAGACGACTCAACGTCTGGGATTTAAGTAAAATCGGAGAGGAGCAGTCCCCAGAGGACGCAGAGGACGGCCCCCCTGAGCTCCTGTTTATCCACGGCGGTCACACAGCCAAGATTTCAGACTTCTCCTGGAACCCCAATGAACCCTGGGTCATCTGCTCCGTCTCAGAAGACAACATTATGCAAGTGTGGCAAATGGCTGAGAACATTTACAATGACGAGGACCCGGAGGGAGCGGCTGATGCAGAAGTGCAAGGTTGAGCACACACTTGCTTTACCTGTCCGGTGTACCGTGAACAGTCTGCACTCTTTTACACACGTGGAGGCGTAcaaagctatttttttttttttggtgacaaCTGTTACACTGGTGTTCAGGCTCACAATGGGTGACACAAGCTAATTTGAAGTATGAGATCTTGAATTCTTTAGGGAACAAAattgccccctccccccacagcttttttaatgtgaatttttaaagcattgggtggtttattttattccttcctGGTTTTAACTAAGATATGGAAACGGACATGATTCGAAGTTTGATACTGTGTTATCTGGCATTTTTATAAGCAATAATGTCTGCTTGTGACATggactaaattacattttcatatggaATTAGCAGTAACAacaattacagaagaaaaataagctaattttatacaatttaaacaaatatagatTGTGcctcttttttatttctctcacaGTCTCCCTCTCCCCTGTTCCAGGTATAGATCTACCAACTGGTTTTCAATTAGgtaattttagtttgtttttgctacTAATACGTAGTCcactctgtgtatgtgtataacgTACCAAATGGGCGTGACttcacttttgtttgttgtgcaCTTAGGGCATAGGATGAGCACAGATcagggttttccttttttgggaGGGGGATACTAACTAAAGGATGAGACGATATGATCTGCGTAGAGTGAttaatggctgttttttttttttttttttttttactgcataaCATTCCTAAGACTGAGGTAAAAAGGTTTTCATATTTATCGGAGGCAGGAGCCCTCTGATGGTGATTGATTAGTTGATTTAATCTCCTCGGCATGTTGGTAAAGGAGCTGTTTTAAGTCTCCTCGTTACTGGCTTAGGGATAGAACAGCCAAaccaagttgttgttttttatgttttttgttttttaaaggaactaAAATAAGCCTTGTGGAAAATATGGCTGTGTGGTTTGCCACGATTTCCGATTTAGTTAGGACTCCCATTTTTCTATTGTATGTACAATGTCGGCACCGTTCTTTTAGGCTCTTTCTTGCTGAGGAGCTCCTTGTTGAATATTAGAAGCAGACTTTTAAAATCTCCACAATTAGCTTTGTACGCAGTGCGATCAGTCCCCCCATCTACCGCCCCCCCCCAGAACTGTTCCTTTTCTTGGTAttgtctttgagattttctgtCTGTTTCCTATTTTGATAGTGACCTCTTGTCTGAGCTTTCTGGACTGTATTCCTCCATTTTTCTTCCTAGCTAAGTGTCTGAAGTACTTCCAAGATGAAaaaatggattttttttttatttttttttgtttcccccccagTTTCCTATTTATTCTGACTTTTCATGACTTGATGAATCTGcgcagttttttttgttttgttttgtttttta

Function

GO:

id name namespace
GO:0031497 chromatin assembly biological_process
GO:0006338 chromatin remodeling biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007049 cell cycle biological_process
GO:0006260 DNA replication biological_process
GO:0033186 CAF-1 complex cellular_component
GO:0035098 ESC/E(Z) complex cellular_component
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10752 RBBP4, HAT2, CAF1, MIS16; histone-binding protein RBBP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129810 lncRNA upstream 343093 8102395 ~ 8109235 (+) True G103868
TU129817 lncRNA upstream 351310 8090966 ~ 8101018 (+) True G103873
TU129788 lncRNA upstream 382633 8061279 ~ 8069695 (+) True G103850
TU129747 lncRNA upstream 417635 8032729 ~ 8034693 (+) True G103823
TU129719 lncRNA upstream 464415 7985084 ~ 7987913 (+) True G103800
TU129921 lncRNA downstream 123270 8584130 ~ 8590598 (+) True G103959
TU129954 lncRNA downstream 258088 8718948 ~ 8721777 (+) True G103987
TU129978 lncRNA downstream 385106 8845966 ~ 8857639 (+) True G104004
TU130035 lncRNA downstream 486913 8947773 ~ 8948823 (+) True G104042
TU130013 lncRNA downstream 507018 8967878 ~ 8970770 (+) True G104029
AMCG00011032 mRNA upstream 18945 8427706 ~ 8433383 (+) True AMCG00011032
AMCG00011017 mRNA upstream 383964 8066837 ~ 8068364 (+) True AMCG00011017
AMCG00011020 mRNA upstream 393396 8054877 ~ 8058932 (+) True AMCG00011020
AMCG00011018 mRNA upstream 401042 8040821 ~ 8051286 (+) True AMCG00011018
AMCG00011019 mRNA upstream 441110 7995345 ~ 8011218 (+) True AMCG00011019
AMCG00011037 mRNA downstream 76634 8537494 ~ 8546945 (+) True AMCG00011037
AMCG00011039 mRNA downstream 98340 8559200 ~ 8567070 (+) True AMCG00011039
AMCG00011038 mRNA downstream 107853 8568713 ~ 8577634 (+) True AMCG00011038
AMCG00011043 mRNA downstream 183463 8644323 ~ 8654378 (+) True AMCG00011043
AMCG00011044 mRNA downstream 208199 8669059 ~ 8693522 (+) True AMCG00011044
TU129402 other upstream 1531397 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 1809700 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 3809970 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 4368742 4049938 ~ 4083586 (+) True G103078
TU128716 other upstream 4872051 3577235 ~ 3580277 (+) True G103030
TU129898 other downstream 87503 8548363 ~ 8552605 (+) True G103939
TU130204 other downstream 1069614 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 2357828 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 3205338 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 3347986 11808846 ~ 11810696 (+) False AMCG00011115

Expression Profile