RNA id: AMCG00011034


Basic Information

Item Value
RNA id AMCG00011034
length 903
RNA type mRNA
GC content 0.61
exon number 2
gene id AMCG00011034
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8463214 ~ 8464498 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACAACCACGAGGCACATCCCCCACTGGACTCCTGTACGGAGGGCGGCGCTCTGGAGGAGCTGGGGCAGTGTTTCCAGATGTGCATTGAGGAAGTGGGCCGCCTAGAGGCCAGGAGGGACAGCCTGGTGCAGGAGATGTGTGCGCTGCGCGAGCCCATGCTGGAGGCGACAAGGGCGCTGCGTGAGGAGCTGTCATCCGTGCTCAGGCAGAAGGCCCAGGCCGAGCTGCAGTGCCAGAGCCTGCAGGAGGACATCTGCCAAGTCAAGCGCAGCCTGTTCGCCACCACGCGGGCCTGCATCCAGTGCCAGTTCACCCTGGAGACCCAGCGGCATGACGTGGCCCAGTTCTCCATCTCCCGGGAGCTGCTGCAGTCCCAGCTGCTCCAGCTCTCTGAGGAGCTCTCCCAGCTCAGAGCCGCCCGGCAGGCCCGGCTGGACTCCCTGAACACGCAGGCGCACAACTCCCACCAAGCTCGGGCCGATGGCGACCTGTCGGACTGCCGTAGGGCCTCTCTGGACCTAGAGCGCTACCTGAAGGAGGGGATCAAGACCCTGGAGGATTTCTATGAGCCCCGAGTGCTGGGCCAGCTGAAGAGACGGCAGATGAGCGCTGAGGCCCTGAGGAGGACCAGGGAGCAGACGGCTGAAATGAAGGGGAGGCTCTGGCCCTTGCAGGAGGAGCTCCAGAGACTCACCCTGCAGAGGAGCTGCCTGGAGGAGAGGGCAGCCCTCATGCAGATAAAGAGGGATGAAGACGTGCGGCAGTACCGGgagacACTGGAAACACTAGAGGAGAGTGTCAGGGAACTGAAAATAGAGGTGAAGCTTCAGAAGAAAAGAAATGAGGAAATTGAATCACTGAAGAACAGCCTTTCAAAAGAACTAGATGTTTACAAGTaa

Function

GO: NA

KEGG:

id description
K10377 SYNC1; syncoilin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129887 lncRNA downstream 552 8460930 ~ 8462662 (-) True G103929
TU129849 lncRNA downstream 120396 8342584 ~ 8342818 (-) True G103903
TU129846 lncRNA downstream 121626 8341363 ~ 8341588 (-) True G103900
TU129839 lncRNA downstream 295290 8167695 ~ 8167924 (-) True G103893
TU129800 lncRNA downstream 406531 8056481 ~ 8056683 (-) True G103859
TU129971 lncRNA upstream 341972 8806470 ~ 8811022 (-) True G103999
TU129987 lncRNA upstream 381466 8845964 ~ 8849961 (-) False AMCG00011051
TU130051 lncRNA upstream 500219 8964717 ~ 8965281 (-) True G104054
TU130052 lncRNA upstream 500874 8965372 ~ 8965579 (-) True G104055
TU130116 lncRNA upstream 773293 9237791 ~ 9265487 (-) True G104098
AMCG00011036 mRNA downstream 10973 8443315 ~ 8452241 (-) True AMCG00011036
AMCG00011035 mRNA downstream 82513 8364720 ~ 8380701 (-) True AMCG00011035
AMCG00011031 mRNA downstream 134272 8328395 ~ 8328942 (-) True AMCG00011031
AMCG00011030 mRNA downstream 314053 8133029 ~ 8149161 (-) True AMCG00011030
AMCG00011027 mRNA downstream 342722 8109323 ~ 8120492 (-) True AMCG00011027
AMCG00011041 mRNA upstream 84335 8548833 ~ 8555531 (-) True AMCG00011041
AMCG00011040 mRNA upstream 114133 8578631 ~ 8582714 (-) True AMCG00011040
AMCG00011042 mRNA upstream 123095 8587593 ~ 8610252 (-) True AMCG00011042
AMCG00011046 mRNA upstream 256886 8721384 ~ 8735583 (-) True AMCG00011046
AMCG00011051 mRNA upstream 378691 8843189 ~ 8864051 (-) True AMCG00011051
TU129762 other downstream 443692 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 2714650 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 3322758 5134210 ~ 5140456 (-) False AMCG00010939
TU128916 other downstream 3813108 4642652 ~ 4650106 (-) True AMCG00010925
TU128814 other downstream 4277240 4169793 ~ 4185974 (-) True G103112
TU129989 other upstream 355053 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other upstream 390407 8854905 ~ 8863666 (-) False AMCG00011051
TU130111 other upstream 769913 9234411 ~ 9236193 (-) False AMCG00011058
TU130252 other upstream 1137386 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 1276635 9741133 ~ 9743785 (-) True AMCG00011086

Expression Profile