RNA id: AMCG00011055



Basic Information


Item Value
RNA id AMCG00011055
length 677
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00011055
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9141598 ~ 9155179 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GGCACAGACAGAAGATGGAAGACCAACAGAAGCCAACGCTCTTTTCTGATCGGTTGAGCGAGTTGGAGAGATTCCAGCGAGCTAGCATGAGGGTCGcTCTGTGGACTGAACAAATTGACACTCCCAGTTTacctttaaaaacatgcaagGTGGAAGATGATCTAAGATGGTCAGGAACCTCTGACCTCTTCAGCAACACCCGGCAATATGACCGGCAGTTCCCCTCACTGTCCACCCTCACAGATCCCCGCTTCTCGGACCCACGCATGCACTACCCCGGGGCCTTCACCTACTCCCCCAGCCCCTCCAGCGCAGGGATCGGGGGCATCAGCATGTCCAGCATGTCAGCATCCTCCCGCTACCACACTTACCTGCCGCCCCCCTACCCCGGCTCCCCCCAGAACCAGAATGGGCCTTTCCAGACCAACACCTCCCCCTACCACCTGTACTACGGCACTGGTTCAGGATCGTACCAGTTTTCCATGGTGACCGCCGGAGGGGAGCGCTCACCCACCAGAATGCTCCCGTCCTGCACCAGCGCCACGACAGGCAACAATCTAATGAACCCCAATCTGACGAGCCAGGGCGATGGGGTGGAGGCTGACGGTAGCCACAGTAACTCGCCGACGGCAATGACCACCCCAGGAAGGATGGATGAGTCAGTGTGGAGGCCTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU130013 lncRNA upstream 170828 8967878 ~ 8970770 (+) True G104029
TU130035 lncRNA upstream 192775 8947773 ~ 8948823 (+) True G104042
TU129978 lncRNA upstream 283959 8845966 ~ 8857639 (+) True G104004
TU129954 lncRNA upstream 419821 8718948 ~ 8721777 (+) True G103987
TU129921 lncRNA upstream 551000 8584130 ~ 8590598 (+) True G103959
TU130060 lncRNA downstream 3142 9158321 ~ 9159219 (+) True G104062
TU130061 lncRNA downstream 3142 9158321 ~ 9159185 (+) False G104062
TU130080 lncRNA downstream 68006 9223185 ~ 9226178 (+) True G104079
TU130139 lncRNA downstream 197194 9352373 ~ 9352587 (+) True G104115
TU130182 lncRNA downstream 318995 9474174 ~ 9475843 (+) True G104147
AMCG00011056 mRNA upstream 15013 9122397 ~ 9126585 (+) True AMCG00011056
AMCG00011053 mRNA upstream 181400 8954206 ~ 8960198 (+) True AMCG00011053
AMCG00011048 mRNA upstream 202814 8935088 ~ 8938784 (+) True AMCG00011048
AMCG00011047 mRNA upstream 303098 8828317 ~ 8838500 (+) True AMCG00011047
AMCG00011045 mRNA upstream 335221 8804751 ~ 8806377 (+) True AMCG00011045
AMCG00011062 mRNA downstream 137454 9292633 ~ 9297651 (+) True AMCG00011062
AMCG00011064 mRNA downstream 171150 9326329 ~ 9344413 (+) True AMCG00011064
AMCG00011074 mRNA downstream 189352 9344531 ~ 9391101 (+) True AMCG00011074
AMCG00011065 mRNA downstream 236219 9391398 ~ 9409014 (+) True AMCG00011065
AMCG00011066 mRNA downstream 270003 9425182 ~ 9430080 (+) True AMCG00011066
TU129898 other upstream 588993 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 2220667 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 2498970 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 4499240 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 5058012 4049938 ~ 4083586 (+) True G103078
TU130204 other downstream 375295 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 1663509 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 2511019 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 2653667 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 2686950 11842129 ~ 11844089 (+) True G104435

Expression Profile