RNA id: AMCG00011058


Basic Information

Item Value
RNA id AMCG00011058
length 5657
RNA type mRNA
GC content 0.46
exon number 18
gene id AMCG00011058
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9222268 ~ 9236228 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTACGAGTGGTGCTTCGCGCAGTGCATTGTGGGCTCCCGGGGGCACTTCTCTCAGACACATTACACTCTCCGATATAGAAGATGGACGCGGGGTTTTTCCGCGGTACGAGTGCAGAGCAAGACAATCGTTTCAGCAACAAGCAGAAGAAACTTTTGAAGCAGCTGAAGTTTGCAGAATGTCTGGAAAAGAAGGTGGATATGACCAAGGTGAACCTGGAAGTCATCAAACCATGGATAACCCAAAGAGTGACAGAGATTTTAGGATTCGAGGATGATGTCGTCATCGAGTTCATTTTCAACCAGCTGGAGGAAAAGAATCCTGACAGTAAAATGATGCAGATTAACCTGACCGGGTTCCTGAATGGGAAGAACGCGCGGGAGTTCATGCGAGATCTGTGGCCCCTGCTTCTGAGTGCCCAGGAGAACATCGCTGGCATCCCCTCGGCCTTCCTGGAGCAGAAGAAAGAGGAGATTAAGCAGAGACAGATTGAACAAGAGAAGTTGGCTTCACTGAAGAAACAAGacgaagaaaaagagaagaaagaaaaagaggataAGGAGAACAGAGAAAAGGATAAATCCAAAAGCCCAAGGAGaaGGAAATCGCGATCCACGTCTCCCAGAAGGCGGTCCCCTATCAAGCGAGAACGGAAGAGCAGCCATTCTCGATCCCCACGCCGCAAGACCCAGAGTCCCAGTGGttcacccccaccaccccccaaaaaaccaGAGCAGCCGGTTCCTGAGCCTGATCAGTCTGAGACGGTGAATAAGGAATTGCTGATCCAGGAAGCTTCCTCCACAAGTGATATTGTGAAGGAAGTCAAACCAGACTCGGTAGCCGAAATTAAAGAATCTTCCCCTGAAAAGCCTCCGAAGAAAGAGGAGAAGCCAAAGccgaaagaaaaggagaaagatgGCAGGAGGGAGAGACCCCGGCACCGCTCTCGCTCCCGGTCCAAGTCTCGCTCTCGCTCCCGCTCACATTCACGCTCCCGCAGGCGACCAAGATCTCGCTCCAGgtcCTATTCTCCCAGGAGGAGGCCAAGTCCAAGGAGGCGCCACTCACCACGCAGGAGGAGTCCCCCGCGGcgcatgcccccccccccacggcACAGAAGGAGCAGGTCTCCTGTCAGGAGGAGGCGCTCCCCCTCCCCGTCCTCATCTggcagcagctcctcctccgGGTCCTCTCGCTCGCGGTCGCCCCAGAAGAAGGCCATGAAGCGCATCTCCAACACACCGCCTCGCAAGCCTCGCCGAGTGTCTCCGACTACCAGTCCGGGCAGGAGGAGAGCCCGCACTCCCCCGCCCCCCAGCCCTCCGGTCAAGAGCCGCAGATCCTCCTCCCCACAACCGCCAGGCCGGGGGAGGAAGGGCCGAGCTTCAGCTTCCCCCTCCAGGATTTCAGCTTCAAAACGTAAACCTGGTGCGAAGAATGAATCTCCATCTCCAGCCCCAAAACCACGAAGATCAGAGCAATCAGAATCAGAAGATGATAAAGGTGGGAAGGGGGCTACGGCAGATTCTGTGCAGCAAAGACGTCAGTATCGCAGGCAGAATCAGCAGTCATCTTCAGATACTGGATCCTCTTCCTCATCTGAAGATGAAGGCCCAAAAAGGACCGCCGCCAGAAACGGAGAGGTCAAAAGGAGACGGCATCGTTCAGCATCCCGCAGCGTCTCCCCGTCCCCCAGGAGACGCCACCGAGAGATGTCTCCGAGGATGCCGCTTGGAAAGAGGTGGCAGTCACCAGTGGCTAAAAGGCGCAGGAGAACCCCCTCCCCGCCAGGCAGACGTCATTGTTCTCCTTCTCCCAGACGCCGCCGGTCTCCATCCCCTCCGCCCCGGCGCAGgtctccctctcccccacctCGCAGGCGCTCCCCGTCTCCGAGGCGCTACTCCCCCCCGATTCAGAGGCGCTACTCTCCGtctccaccacctcctcctcccccccttATGCAGAAGCGCAGGGGGTCTgcatcccccccacccaaacGGCGGACTTCCCCCTCCCCGGCACCAAAACGCAGAGCCTCCAGATCACCGCCCCACAAACGCCGGAGCTCTCCGCTACCAAAGAGACGTaccacccctccctccccttccaGACTCAGGAGGAGCCCCCCCCCGGCCAGCAGGCCTGGCAGAGATGCTCGCTCCCCTCCTGCCCACGGCAAGCGCCTCTCTGCCTCGCCTGCCACCCGGGGAAGGACGTTACGAGGATCTGCCAGCCCCCCTCCCCGCCGGGGCCCCTCTGGCACTCCACCGCCCCCGGCCCCCCGACGCCCTCAATCACCATCTCCTAGTAACAGACCCATACGGAGGGTGTCTCGAACCCCCGAAcccaagaaaacaaagaaGGCATCGCCGAGCCCCCAGCCTGTGAGGACGTTGGCTTCGAGGTCGGTGTCTAGATCTCCAGAGCCAGCCCCCAAAAAACGGCCTGCGCCCACATCTGCCTCCCCGTCTCCCTCTCGCTCGGCCAGTGCGTCTCCGCCCCCTGCGGTGAAAAAGGCCAACAGTGCGTCTCCGAGCCCTTCGCCGGCAAAGAACTCGGATCAAGAGGCTAGTggcaagaaaaagaagaagaagaaggacaaGAAACACAAGAAAGACAAGAAGCACAAGAAGCACAAGAAACACAAGAAGGAGAAGGCAGCGGGAGCCCCCTCAGCCCCAGAGATGTCCGCTCCTGAAGCCGACCTCGACTCTGATCCCAAGAAGGATTCAGACAGTGAAGCAGAAGACAACCTTGATGACCTAGAGAAACACCTCCGAGAGAAAGCGCTGCGCTCCATGAGGAAGGCACAGACCTCACCCTCCGAATCCTGAAGACGTGGAACGCAGAACGCCCCTGTGTATTTTAAGTTTGTCTTGTTAACTTGGTTGAGCTTCAGAATGTACAATTTGTTGTTTACTCCCTTTATCTGTAAAGATTTTATACAGAAAATCTGATGGGGTTTTCATTAAAGAACAGCCGCAATATTTACTGGCAACTCCTTTCTTTTTGCGAAGAGACCGAAGAATgctacttttgttttaatcactttttttgtattgtaattataaagTAAACTCAAAGGTGGGGGGCTGTTCTGATTAAATTGGCATCATGTGCAAGAAATGACATCACCCTCCAATTGCCAgctatataatacatttcaatctgCATGGATGCAGTAAAGCACTGAAATTCCCTAGTCTGTGTTACTGATTTGCATGGAGCAgccaataaattaaatcaagttaACAGTAATGCCATTAATGGTGTGAATTCTGTCTACATAACTAATTAGGATAATTCAGTTGCATCCTGTAGTGCAATTcagaaacatttattgtttttgactacttttttttttgtaaccaaaaattagtttttcttgtcATAGTGGAAATCCATGTTCTGTGGCAGTGTATGCTAAACATATTGGCtgaaatcataaaacaaaaacatgactggatttttttgttttaaagtttttattttaaggcattCATTCTGATAGATTTTGTACAATGCCCTTGTTAAACCGTTAATTGATGGCAGGTGTAAGTCTTTATGTGGTGGGTCTAAcatccacatttattttcaaaacctgTTTGCCTGTGGGAGGTTATTGGacctgtatttaaatatactgcttttgtcatcttttgaaattatagatttttttttatatatataaacattgtggtttgaattgtttttcatctttttttatatataacaaattcTCTTGGGGCTGAAACAGGACTGTGAAGAGAGATTTCTTCAAGTTTGAAAGAACCTTTCACTGTGAAGTCATTAAACTGTTCTGTCAGAGAACCTGGAATAACCTAGTTCATTTCTGTATATCAAAACATGTAAGGTCCTTCGTCTAGTTGGTTTAAATGTTCATGATTTAGACATTGATCTGTTACATCGGTTCCCTTAGCCTTACAGCATTATTAAGTGAAGACTTCTGAAGTTTTAGTTAAAAACAACCTGAAATCCTTTCGATCAAATTGCCACTTTGTTTTGCCCTAAAGATCTCTTCCTGTAGAGGGCGCTTTGTACAAAATTGtgtatataatgttgacacacaAAAGGGATGATGGGGTGATTTTTgagtttaaaatttaaatattcaagTCAAGTATTtactggttttttttttcattataattttgcCCTTTTTTTGGAGGAAATGAATAAAGTTTATAGTGCAAAAGATTGGAATTTTTATTCGCAGTCTTTAGTAGCAGGAGCTTTGTTTCTCCTTCATCTATGCAAAATTTAACACTTAGCTGCTTTCACTTTGTGTAACAAAGAAAATCAGTGTTGGTAAATATTACCTTGAAGTCAAGAATGCTTAAGTCAGTTtcactttttgtctttttcctggTTCTACACTGGCTAGGATCTAACTGAAGTTTGCATTAAGACTTGTTTGTACATGGTTTATAAAATCTCGCTTGCAAAGTTTGGTAGGAACTGAACTGTTCAGGATTAATAAATTGGgcttattttaatgaaaaatgatttttatatttttgaatattcgTAGTGTGTGTCGAGCCAGTTGAATGTTTAGTAGTAgaaattttagaaataaaaagatTCGTAACTTGATATTCATTGTTGCATACACTGAAAACCTAGGTACACAAAattggtcatttgaaaacaaaagggtACATTCAAAATGGGGTCTCTGCCCCCATCTTGTTTTTTCAATCTACACCAACAAGTGGAACATGGttgcaatgtgttttattttcctttaaaataaaaatttaaaaattaccCTTTTGTGATTACTAGAATGACATCAGCTGGGAATTAGTGTTCTCTAGTGTACTTAAAACACGGTTTTTGTGTGCCTGGAATAATGTGGCAGCACCACCCTAAATTTGAGAATGAACGgattaatgtaaaattattttctgattaagAAGGAAGCCTGCTGGCAGCTGTGAGTCATTTCTTTAGTCCCCTGCAAATATTCATGAAGGGAGATTTAAAGCTGCATCATCATTCTGGTCatatatgattatgattttagtattttattaaatgcattagtTAATCTGCCTCTGACTAGCTAGTCTGATTcttaaatcatttttgttttttttcatgtcttaaAAGCTTCCTTCCTTATTTACTTGAATATATTCACTAAATCCATTTCCTCTTTTATAGTTTTCAAATAAGAGAAGAGCATTTGAAGCAGCAGGGAATCCTGGCTCTGATGAATGATGATCCCAGACAGATACAAAGTAGAAGCTATTTACAGGCAAAGAGGCAAAAAGTATTTATACTTGTGTCCtggaaaattaaactgaaccactgtgtataaattaaataaagaacctGCATATATTGAATTGCAGTATTATTTGTAACCtatacaattaaaagtaaagGTTGGTTCTATGCAGATAAGGataaatctttttattttatattgctttgCGTTAACTTTTAGATCTTGTTTCACGTCCTTGAATTGATTTTTTACCTGCtggattaatacattttgctgCCCTTCTCCTCGATAAGAAGATTTGATCATTCCCCCCTGTTTATTTACAGCTTTCCTATTTTAGTTTCTTCGGCTGATTTCCACTGTCCCTTGGTGTGAACTGGGTACTcggggcgg

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process

KEGG:

id description
K13171 SRRM1, SRM160; serine/arginine repetitive matrix protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130052 lncRNA downstream 256689 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 256987 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 372307 8845964 ~ 8849961 (-) False AMCG00011051
TU129971 lncRNA downstream 411246 8806470 ~ 8811022 (-) True G103999
TU129887 lncRNA downstream 759606 8460930 ~ 8462662 (-) True G103929
TU130116 lncRNA upstream 1563 9237791 ~ 9265487 (-) True G104098
TU130156 lncRNA upstream 174361 9410589 ~ 9412922 (-) True G104126
TU130348 lncRNA upstream 1487362 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1709773 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 2179962 11416190 ~ 11420103 (-) True G104315
AMCG00011057 mRNA downstream 21601 9187710 ~ 9200667 (-) True AMCG00011057
AMCG00011054 mRNA downstream 251496 8965817 ~ 8970772 (-) True AMCG00011054
AMCG00011052 mRNA downstream 269519 8941116 ~ 8952749 (-) True AMCG00011052
AMCG00011050 mRNA downstream 291670 8913441 ~ 8930598 (-) True AMCG00011050
AMCG00011049 mRNA downstream 335563 8866341 ~ 8886705 (-) True AMCG00011049
AMCG00011059 mRNA upstream 3133 9239361 ~ 9249868 (-) True AMCG00011059
AMCG00011060 mRNA upstream 17905 9254133 ~ 9260814 (-) True AMCG00011060
AMCG00011061 mRNA upstream 63769 9299997 ~ 9309271 (-) True AMCG00011061
AMCG00011073 mRNA upstream 178854 9415082 ~ 9423743 (-) True AMCG00011073
AMCG00011068 mRNA upstream 194358 9430586 ~ 9434597 (-) True AMCG00011068
TU129989 other downstream 358602 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 358602 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1202746 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3473704 5704770 ~ 5748564 (-) True G103395
TU128994 other downstream 4081812 5134210 ~ 5140456 (-) False AMCG00010939
TU130252 other upstream 365656 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 504905 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2759185 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2831237 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 3089869 12326097 ~ 12328282 (-) True G104629

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022848 False 803 nonsense_mediated_decay 0.48 8 NC_007128.7 25426131 ~ 25437273 (+)