RNA id: AMCG00011059


Basic Information

Item Value
RNA id AMCG00011059
length 2019
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00011059
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9239361 ~ 9249868 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCAGTGCTGAACAGAAGCAGCTGAACCTGAAAAACCAGTTTACATTGGAATTACGCTGTCATGGCGTTCGCAAGTCAGTCGCAGCTTCACCTTTTCTGGTTGCAGGAAGAGGATTACTGATTTGTGTTATTGTGGCTGGTTCtttcttcagtttttattgttgttttggtaTTATCTTCTTCACGCTCCTTAACTCCAGGTTGGACTATGTCTGTGTCACTCCTGAAAGAGTGTAACTGAATCAGAGAAGATCTGCCCCGAGTTCAGATGAAGGCACTAGCTCAGCTTCGGCTGGGAGAACAGACATTCCTGGAGATGACAAGCACAACAGCATCACCAGTGACAAACTCCACCACCACCAAATCCAGAGAACAAATGATCTATCAAAaaaaaCACGCACATCGCGGATACTGGGAACCACACGCCGCAAAAAGACAACGTCCTCCACAGCTCAGACCAACTTAGCCATGAGTAATTTAAGAGCGGGCACCCCGGCTCCGGCAGGCCCTTTTCCCTTTACAAGCAGCTCCATGGAGAATGGCAGACAGCTGCCCACGCCGAGcatatacaataataactaTAACGTGTTTGCCCCGGCGAACTCAAACGGGCAGCCGGCCGTTGTGACCATACATATGGCAAATGCAATGGACATCAGCTAGCATCCTGACTATACACAGCTTATATACAGTTCATTAAGACTGAAAAAACGATTGCCCTGGGGAGTTTCTTATGTTCAACCGAGGACGTAAGGACAGGAGAACAGGCAGCAGGTGTGACGAGGAGCTGGCAGAGGACGGGCACAGCTGGGGCTCTGTGACTGGCACACACGATAGCCTTGTGGTCTCCTTCTTGCAGCTCAGATTTCCGaggttctgcgcagatctgcagagtTCCACCGTTCCCATTGGCAGAGCAGCGCAGAACGAAAGCGCCTTGTGTTATAAGATTGTGCTGCCGCTCTCTGTACACAgtcagtattgtgtgtgtgtccatgtgtcgaGCTTACAGGGTATATGCTGTACATGATTTATTGAAAGAGTCGTGTAGTTGTGTTTGAAATTGCTATTTGTGTGGGTCTTTTTCCATTTCTGATATATAGCCTATAGTTCTGGCTTTTAAAAGTGATATAAAAATACTAGGAATCCATTCAGTATAAGTGTCCTTGTCACTTTGGTCGTGCTGATTTTAAACGGACCTGGTTCTCATAtctaattattaaaacaataattgtgtTACCTCCAAGAAGGTTTCACCTCATTTTTCTCTGGTTTCATGTCAATTCTATAATCCCTCATTCTGTCAATGGCGCTTTTCTTGAATtcaccttttttatttgtttttttttttttcaggtggaGTTGGGTTTCCTTTTAACAATGGCCTTCTGTGTCCTATAAAGTGCAATAAAGCACATTCAGCAGAGTTCTGCTATTATGTACTTTATTTAGCCTCTACTTTAAAAACAAGGGAGACTGTctagagaaaatatatttatttcctgataAAAGTTTTGTgacattgttaaagaaaaaagtttgaTCGATTTTGTTAACATGGCTGTGCAATATGTTATATAGTGTACCAATAACATAAGACTGAAAATGAGATATTAAAGAGAATTCCTAAGTGTAGTATATGAATATGCACTGCCAGAGTACCTTCCAGAAGGTGATTTCACATATACATGCGGGACTTGAttgtctttctttattattattcacgacacttgttaataaaatatgccAAAGCAGCTGGACACTGCTTTTTAATGAAGGTTTGATAGATGTTTGCGCTCACAGGTACAGCtttgataaatgtttaaacttgACTGAACCATCCTGAAAGGACTTATATGTCCTGAAAAACTTGACAATCTGCTTTCCTTCCCTGAAAAACCTTTATCTGCTCTTAATTGTatttggggtgggggttgtttCTGTATTATTGATATTCATGagatgtgtatatgtgtatgtatatatatatatatatatatatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130052 lncRNA downstream 273782 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 274080 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 389400 8845964 ~ 8849961 (-) False AMCG00011051
TU129971 lncRNA downstream 428339 8806470 ~ 8811022 (-) True G103999
TU129887 lncRNA downstream 776699 8460930 ~ 8462662 (-) True G103929
TU130156 lncRNA upstream 160721 9410589 ~ 9412922 (-) True G104126
TU130348 lncRNA upstream 1473722 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1696133 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 2166322 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 2170881 11420749 ~ 11426225 (-) True G104319
AMCG00011058 mRNA downstream 3133 9222268 ~ 9236228 (-) True AMCG00011058
AMCG00011057 mRNA downstream 38694 9187710 ~ 9200667 (-) True AMCG00011057
AMCG00011054 mRNA downstream 268589 8965817 ~ 8970772 (-) True AMCG00011054
AMCG00011052 mRNA downstream 286612 8941116 ~ 8952749 (-) True AMCG00011052
AMCG00011050 mRNA downstream 308763 8913441 ~ 8930598 (-) True AMCG00011050
AMCG00011060 mRNA upstream 4265 9254133 ~ 9260814 (-) True AMCG00011060
AMCG00011061 mRNA upstream 50129 9299997 ~ 9309271 (-) True AMCG00011061
AMCG00011073 mRNA upstream 165214 9415082 ~ 9423743 (-) True AMCG00011073
AMCG00011068 mRNA upstream 180718 9430586 ~ 9434597 (-) True AMCG00011068
AMCG00011069 mRNA upstream 189119 9438987 ~ 9444334 (-) True AMCG00011069
TU130111 other downstream 3168 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 375695 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 375695 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1219839 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3490797 5704770 ~ 5748564 (-) True G103395
TU130252 other upstream 352016 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 491265 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2745545 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2817597 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 3076229 12326097 ~ 12328282 (-) True G104629

Expression Profile