RNA id: AMCG00011060


Basic Information

Item Value
RNA id AMCG00011060
length 3973
RNA type mRNA
GC content 0.39
exon number 3
gene id AMCG00011060
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9254133 ~ 9260814 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caggaGAGGTTTGAGGCCCTGTTCCGGATCTACGATGAGCAAGTGGCGTTTCAGATGTTCAAGAGCTTCAGGAGAGTGCGGATAAACTTCTCCACCCCCGAGGCAGCGGCCCGGGCCCGAATAGAGCTGCACGAGTCCGAGTTCAGCGGGAAGAAGCTCAAGCTGTACTTCGCTCAGgtgcAGAATTCGGGGGAGGACACTGACAAATCCTACTTGGCCCCCCCCCAGCCCGTGAAGCAGTTTCTCATCTCCCCCCCAGCCTCTCCCCCCGTGGGCTGGAGTCAGAGTGAGGATGCAACACCGGGCATCAACTACGACCTTCTGTGTGCTGTCGCCAAATTAGGCCCAGGAGAGAAGTATGAGCTGCACGCCGGCACCGAGTCCACCCCGAGCGTGGTGGTGCACGTCTGTGAGAGCGAGaccgaggaagaggaggaggccaAGCCCAAACAGAAGATCATGCAGACGAGACGCCCCGAGGCTCCCCCGAAGCTCATCAACTAAAGCTGTGACTCTCTCGCTTCATTTCAGTTCAGTAACATTGGGAAAGGAGCATGCAGAGGTGGCAAGCCTGTACAGACGGGAGTTTTCATGCACGCACATTTTGTACAGAAAAAGGGGGAACCTGTGTAAGCTGACACGGGGCAGGTGAATCGGAGACGGACTAAACTCGCATCATCTGTTCATTTTAAGCACTGTGGTTTCTCGCTTGCTTTTCTTTTACcgtgttcttttttttgtatgatgattatgattattattcctattgttgttaatgttaatcTTCTGATTCTTTACGTACTCATGAACAAGTATCATTCATGTGATTCCAAATTAAGCAGCGGACCGGGAGTCTTTTTTATCGCCAGTGCTCTGCTTTTCTCAGTCATAGCAGTTGACCGGTCGCATTGCGAAAAACAAACTCTGAGAGGGGACAGATGtgctttacattacatatactCATGTATGTAAAAAAGGAAAGTCAAACTGTTGAAGGCATAGACACAGCTTGCCCTGTTCTTTGGTTGAGGTGTTGGAGTGTTTCAGGGGAAGGATGTTGACTGAATTAACTGTATATTCTCCTCTTTGATACCACATGTAAAAgctaaaaacacacatgcatgctaAAGCAGTCAGGAGCTGATGTGTTTTTTACTTGTCATCGAGACAGAGAAATGGAATGAAGCTTTTGACAAGGCGTATCGTAGCTGTGGTGTCTTAAGGGTCAGAAACGGCAAAACGGAAAGCAAAACTTGTGTTATTCTCCGTGGCAACTTGTGATCGTGATGGCGCTCAACCGTGGACAGTCTTTGATCTGGTTTAAAGCTTGTTTTAAACCCCCATGATGCAAGGGCACGGGTTTGAGAAATACAACTGTATACAGTGTGAACGGAAAGCAAAACGAAACAAAGCTGTGATGTCCAGTCTGCTTACACAAATGGAgtaaccaaaaaacattgtcgTTTTTAAGTTGACTTTTTAATGTGAGGCTGCATTCATCCAGTTACTTTTCTGTGTGAACGTTGTAAGTAGTTagtttttatcttgttttacaGTCCCTGCTTCAAGGTTGGCACAGAATAATTGTAATGTTCCCATAATGCTAAGTGTCAGGCAAAGAATTGCATATCAGGGGCAGTATTGTGAAGTTACAAACGAGAACCATAGCAACATCAAGACTTTTCTATTGTAAATAGCCTAGGTTGTCAGAGAAGATTGAAAGGATATATAAGGATGTTTGCTGTAAAGAGcagtacaattattattgcttCTCTAAAGCTTATCTATTCATTGTGACTGTTCTTTCTGTTTACTAGCTACCAGAGGTCTCGTCATTCACAAGAGTGGGATATCTACtattccctttttaaaaatagattacaaAATAGTTGAAatcatttttgtgttaaaaatgtaatgttttcttacCATTGCCAAAAAGTCTAACCAATTGAAGACATAAAATTATTCAACTGGGCTCATTTCATAGTTTCCTTGATTAAGTTTGGGAAACTTTAGCCTTTCAGAATCCACTCTTGAATAAAATTAACCACGAACATCCACTGAATTTTTTCAAGCAAAAATGTGAATTGCAAATGACACGTTCTTATTTGAAACTCTGCCTATTTGTGGTGGTAATTAGCACCAGACTGACATCTAAAGGGGAAATGTGTgtcaaacatgtatttataaataaccaTGCTTTATCcttttttggtttattatactgtattttatttttaaaatctatatatatactatatttgaATGCAAATTGCATTGCTGTTTTCTATACTCATTGCTATTGATTAGTTGTACCCTaacagtacaaaatataaaagtggcATAATCAAGTACggtatattttacataatccTTTTTTCTCAGGCCTGTGATTATTGTTAGCCTGTATGGCAATGGACaaacatcttgttcctttttctgggcatttattattaaaatatgtgtcgttgagtttattttttgtatatattttaaaattgagcCTAGAGTTCCTACTGCTATCCTCAGCAGAGTCTAACCTGATTTGAGTCAGATTTGAAGTGGAGACATCCAGTTTGGTCCAGAGCATAAAGACGAAACTATGTCACAGTAAAcccaaatgtaaacaaacatgttttgctAGTCTCCCCACATTAATGTTTGATACAGTAAGCTGTAGGAATACTGACTTGTTTTTTAAGAACTCCTGCGTTGACATGTCCTACTGTTTATGGAAGATGACAAAGATGTGTACAAAATGACAACTATGACAAATGCTCTACCTAATTGGGATTTAATATTAatgctattgttattattataatgattattacaaGTCTGCATTATAGCACTTTATTTTGAGGGGGCGTTCTATGGTTTCCATGGAagagcattatttattttgtatttaattaagattGATAATTTTTCTTACTTCTTGCGTACAAACACCTTGTAGCCTTTGCTTTCACCGGCCTAGAAGCGTGAGAATTATGAATTCCAGATTCAGATACCAATATTCAAACCGGTTTCAGAGGGACTGGTGTTGAGAGGGACACGGGCACAAGAAGCTCCTCATGTTCTGGAGGGGATGGCAGGCTTATTCAGATTGAGGGGGGTATTGTAATGATGCCATCAGAAACAATTGTATGactttgtgtgtatttgcacaTATACGTTTTATCTAATGTAAGCTTAACTTCAGAGCCAGTGTAGTGTGTTCAAGTGTAAAACACCTGAGGATGTGTGCTCACATAAGCATTGTCATGTGATGATGTTTTTGTCTAGTAATCTTACTCGTCTGGAGTATGGGTCTTTGAAACTGGGTGCATTTTCTGTCTCaaaactttctttttaaaacatgtatgcaGAGCTTTACATTATGGTGGCCAATGAAATAAGcttggtctgttttttttttgtttgttgtttttaaatcatattatcATTCATGGctttaaaggaaaatgaagGTTGCTTTATTAAAGATTAACCAGAAATTATATAAACGGTGAGAACGGAAAAGCTGCTTTTAGTTTGACTGGATTCGCACTCACAAATCACATGGTGTGTCGAAAATGGACTCAGTTTTATTCTTCTTGGACGTCTATTACAAATCAATAACGTCACTGTTGTActgttttgttgaaatataaatacCGTGTCTTCTTGTACTGTAGTtgttaagagaaaaaaaagtagcaATCAAGCAATAATTTATGGTTATATCTGTACTTACTGTATTGTATGTAATAATTTCCAGGATTGTTTTATCTGACTGTTACttgcttttatttgtgtagaagtatgaatgtaatttgtttcacaTAGAAGTATATAAAGGATTATTCTTAAACATGCTTTCTTTTGTCcgtttcttctttctttccttctccttGTGTGACCTGTCTAGTAGAAAACTGAAAGCAGTTAATATGACACTGTTCAATGTTTTCATCTATAAAAGCTT

Function

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17905 RCAN3; calcipression-3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130052 lncRNA downstream 288554 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 288852 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 404172 8845964 ~ 8849961 (-) False AMCG00011051
TU129971 lncRNA downstream 443111 8806470 ~ 8811022 (-) True G103999
TU129887 lncRNA downstream 791471 8460930 ~ 8462662 (-) True G103929
TU130156 lncRNA upstream 149775 9410589 ~ 9412922 (-) True G104126
TU130348 lncRNA upstream 1462776 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1685187 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 2155376 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 2159935 11420749 ~ 11426225 (-) True G104319
AMCG00011059 mRNA downstream 4265 9239361 ~ 9249868 (-) True AMCG00011059
AMCG00011058 mRNA downstream 17905 9222268 ~ 9236228 (-) True AMCG00011058
AMCG00011057 mRNA downstream 53466 9187710 ~ 9200667 (-) True AMCG00011057
AMCG00011054 mRNA downstream 283361 8965817 ~ 8970772 (-) True AMCG00011054
AMCG00011052 mRNA downstream 301384 8941116 ~ 8952749 (-) True AMCG00011052
AMCG00011061 mRNA upstream 39183 9299997 ~ 9309271 (-) True AMCG00011061
AMCG00011073 mRNA upstream 154268 9415082 ~ 9423743 (-) True AMCG00011073
AMCG00011068 mRNA upstream 169772 9430586 ~ 9434597 (-) True AMCG00011068
AMCG00011069 mRNA upstream 178173 9438987 ~ 9444334 (-) True AMCG00011069
AMCG00011070 mRNA upstream 195077 9455891 ~ 9460295 (-) True AMCG00011070
TU130111 other downstream 17940 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 390467 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 390467 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1234611 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3505569 5704770 ~ 5748564 (-) True G103395
TU130252 other upstream 341070 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 480319 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2734599 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2806651 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 3065283 12326097 ~ 12328282 (-) True G104629

Expression Profile