RNA id: AMCG00011062



Basic Information


Item Value
RNA id AMCG00011062
length 856
RNA type mRNA
GC content 0.39
exon number 5
gene id AMCG00011062
representative True

Chromosome Information


Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9292633 ~ 9297651 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GCTACAGGGGAACATCACAAACAAGGTGTTACCATGTCAGTCAGTTGACAGGGAGCTgtgataaaaaaacacaaaaaaaaaccccactatgtaaataaaatggtttatagGCAACGGCAGTTAAAAAAAGAGATTAGTTCATAGAGAAGACTGGATGCGGTGGCCAGAGAGTGGGGATATATTCTTATATTCAACCATGGGATGCACAACCAGCACAGAGGTCAATGCACAGCACTCACCAACAGAAGCCCCCAAGGACAATCCAGaaagaaataaaaacccCAACTCCAATGAAGACATGCAGGTGCTTACAGCTGTTGATGATGAAGAAAAGAGTGAGGAGCCTAAATCTGAAGCTGAAGTGGAGAGAATAGAagAGAACGATACATCACAGAATAACTCACACACGGAGGCAGATCCACCTGGAACAATTGACAATGCTGAGGAGAAAGAGGCATAGAACCAAACCTCTGGAAAATCTTTCTTCACTAAACAACAGGGTCAAGAGACAAGGAACAAACTATACTGTACACCGAATATAGATCATTGAATTACAAACATGTAAAGAAGTCAGCAGTAAGAGATTGTGTAATTCCTATTTCAGGTGTAAATGTCACTagaggaaaataaacagttatGGAGTAAAAACTATTTGACAAAATAgcccaattattttaaaaacaagttttccTAATAGAAGCATTAGCATTAGGCTTTGTGCCAGCAACAGTAATGGCCAAACTGGTTCAAATCCATCACCCTCTGAGTCCATCATACACAAGATAAGTGTTGAAGAACAAACCAGAACACTGATGTTATTAAACAGctaaataaaagcacatatgCAAGTATTAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU130080 lncRNA upstream 66455 9223185 ~ 9226178 (+) True G104079
TU130060 lncRNA upstream 133414 9158321 ~ 9159219 (+) True G104062
TU130061 lncRNA upstream 133448 9158321 ~ 9159185 (+) False G104062
TU130013 lncRNA upstream 321863 8967878 ~ 8970770 (+) True G104029
TU130035 lncRNA upstream 343810 8947773 ~ 8948823 (+) True G104042
TU130139 lncRNA downstream 54722 9352373 ~ 9352587 (+) True G104115
TU130182 lncRNA downstream 176523 9474174 ~ 9475843 (+) True G104147
TU130186 lncRNA downstream 179916 9477567 ~ 9481674 (+) True G104150
TU130260 lncRNA downstream 395493 9693144 ~ 9746864 (+) True G104204
TU130278 lncRNA downstream 575002 9872653 ~ 9872890 (+) True G104221
AMCG00011055 mRNA upstream 137454 9141598 ~ 9155179 (+) True AMCG00011055
AMCG00011056 mRNA upstream 166048 9122397 ~ 9126585 (+) True AMCG00011056
AMCG00011053 mRNA upstream 332435 8954206 ~ 8960198 (+) True AMCG00011053
AMCG00011048 mRNA upstream 353849 8935088 ~ 8938784 (+) True AMCG00011048
AMCG00011047 mRNA upstream 454133 8828317 ~ 8838500 (+) True AMCG00011047
AMCG00011064 mRNA downstream 28678 9326329 ~ 9344413 (+) True AMCG00011064
AMCG00011074 mRNA downstream 46880 9344531 ~ 9391101 (+) True AMCG00011074
AMCG00011065 mRNA downstream 93747 9391398 ~ 9409014 (+) True AMCG00011065
AMCG00011066 mRNA downstream 127531 9425182 ~ 9430080 (+) True AMCG00011066
AMCG00011067 mRNA downstream 137558 9435209 ~ 9439791 (+) True AMCG00011067
TU129898 other upstream 740028 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 2371702 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 2650005 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 4650275 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 5209047 4049938 ~ 4083586 (+) True G103078
TU130204 other downstream 232823 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 1521037 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 2368547 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 2511195 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 2544478 11842129 ~ 11844089 (+) True G104435

Expression Profile