RNA id: AMCG00011063


Basic Information

Item Value
RNA id AMCG00011063
length 3153
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00011063
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9459334 ~ 9467512 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggaggtgcgCAGCTGCGATGCCTGCGATCGCTTACCTGCCACAGCGCACAGGCAAGTgcttcctgcagcagcagccCGGGGCAGGGTGAGAGGTCAGTGCCGGAGACTCGGCTCTCTCCGCCGCCGCAGCCCGTTACAATGTGACCCGACCGGCGCTTCCCATCCTCGCCACTGTGACCAGCCCGAGCAGCCCGGGTCTCCGCGCATGGTGGGGGCGACTGAAGCGCGCAAGGACGGTGTGTGCGGCTGGGCCGGATCTCCCGGGGAGGACGCCGCTCGGCTGCCGCACAGCCTGTCACTCCGGCTGCGGGGAGATGCCAGGATGGAGTGCTGTCCAGACGAACCCCGCTACACCATTGAGCAGATTGACCTGCTGCAGCGCCTGCGCCTGTCAGGGATGTCTAAGCCTCAGATCCTCCATGCCCTGGACTCCCTGGAGCGCCTCGATTCCGAGCAGAGCCACAATTTCCCCCGGGAACGGCCTCCGTGCTGTGAAAGCCACGGCAGCGGCCCTGCCGCCCCCGTCGCTGTtgcttcatcctcctcctccacgTCCTCTCTCACCTCGGCAACCACTCAGACCCAGAGCCTGGCCGCCTCCCCATCACCGAGCAACAGCTACGAggcctccccccctcccctgtaCCCTGCCAACGGGGGTCAGAGGTCGTTCAACTATGACCTTGCTGAGGAGGACTGGGATGTAGAGGAGAAAGTAGAAGAATACATGAGGAGGGACAGCAACATGGTGAAGGAGGAGATCAAAGTGTTCCTCAACAACAGGAGGATCTCACAGGCCATTGTGGGACAAGTCACAGGGATCAGTCAGAGCTATATATCCCAGTGGTTGCTGCAGCAGGGCCTGGAAATGAGTGACCCCAAGAGGAGAGCTTTCTACCGCTGGTACCTCTTAGAGCGCAATAGTCCCGGAGCCACACTGTCGCTGCGTCCCCTGGTGAAAGAGGAGCCGGAGTGGCGGCCCAACAGCAGCCCTGGGGGAGGCGGGACTGGGGGCGGGGGTCTGAGACTGCGCAGAGGGAGTCGCTTCACCTGGAGGAAGGAGTGCCTGTCCGTAATGGAGAGTTTCTTCATAGAGAATCAGTACCCTGATGAGGCAAAGAGAGAGGAGATTGCCAGTGCCTGTAACGTGGTCATACAGAAACCAGGCTGCAAGCTCTCGGAATTCGAGCGCGTCACAGCTCTGAAGGTGTACAACTGGTTCGCAAACCGCCGAAAGGAGATGAAGAGGCGTGCTAATATTGAAGCTGCAATTCTTGAGAGCCATGGAATTGAAGTCCAAAGCCCCAGCTGTCATTCAAATGGTGATGAGATTGAGGTGCCAGAGTTCAATGAACAGGAAGACATTTCTTCCAGGAAAGATCCTGAGCAACAGCCAGTCTCATTGGTTGCTGAGGTGGAGACACTCCACAGCCCCACCTTGATCTTGGCCAATCAGAAGGCAGGAGAGTTAAAGAGGGAGGCAGCTGATGAGGAGTGACAGCCAGAATGGACCAATGGCTGGGAAACACAGGGGTGCAGACCAATCCCACAGGCTGTGACTCAAAGCTCCTCCCATGATGCCTCAAGAGGGCAAGGCGAGCTATCGTTGCACGAGGAATTCCCTCTGCACTGTCAGTGGCAGGGAGGCCACCGTATGTAATTACGATAATTATACTAATAGTAATGGCAACAGTAACAATATTAATCTCTATATAGTGCATTCCAGGATTGTCTTAAGAATTGCTCCTTGACAGGAGAGGGACGCATGGTGTAGGGTCTGGGATTGCAGGAGAGAGCCCAGCTACAGCTTTATCATTGTGACCCGCACGTAGTTTACCTTTTTGCTGTCCTCAGCTTTACAGCTCCGTAAACGATGGCTTTGTGTGCACTGCAAAATCACAGCAGCCTtgaatagtattttttatttgaactcTCAGTAAGTTAAGTGGGAACCTGCAGGACAGGGAAATATTTGGAATTAGGAAAATGAACTGTCTTCTGTGTGGTTAGTCTGTTAGGCTTTCGTCATGGCTGAGGGCCATGAGTCTTGCAGCTCCCTCTGGATGATTTTAGTCCCACCAGGAACTAAACTTTATGAATAATGGGAAAATACATGACTCAGTGGAGATGAAATCTCAGGTAACGTTATTTCAGACAGAAGAAGGAAATGATAGGAGACTATAATGTAGCAGCAACCTTGGTGCTAAATACTGGTTGACTAAAACGAACTGCTTTTAATTTTACGGATGTTTTGTGTGGAATTTACAAAGTACTTTTTCCAAGTAGCAGCGTTTATATATGAGGGTTTAACTTCCCTCCTAATGGCACCACTGTCAGAGCCAACCATACGTCTTAAAACAGGGTTGGTAGTGCAAGTAATTTATTATGAGCAAGGAAGAATGTATGACCCATGTGGCTTCCTAATGGCCAATATGTAGCCAGGACCTAATTTCAGCTATATTCTCCATCTCTGTATTTCACTATGCTGCGAAACTCTagaaaacagtgtttaaaaagcAGGAAAACCATACCAGCACTGACGCATATTTTATGTGGTTTGACCATTTGACCGATAATGTGCAGATGTGTTACTGTGCTTTTATGCATCTTATCTTGCAAATCACATAAATAGCtgctaatacaaatataacttaAATTAGTGCAAAGAGCATACCCTTTCAAATGCTATGTTATTTTGATgtaatagtttttctttgtatGGATGTAACATGGATAGTATATCTCTAAAGGGCAAAGAAATCCAAGAATGGGTTAGATTTTAACCGCAGGTAAAGAAAACGGTACGAAAATAACACTATCAAAGAATGCAGTGTTTAAAGCGCTTTTTCAGGGAGAGGCTATTCTTAGTGCAGTACATGCCTGCTTCAATTTGATTAACCAGGGAATATACTGCAGTGTATATACTGTCAAAAGCCGAAACAACCAGTGCACCTCTCTCGATTAGTCTGCTTATATGAATGGAGGAAGAACTAAAGGTTACTGGAGTGAAGTTATTCTAAcataccatttaaaaacaatacataagaaGACGAAATAAAGATAACATTTAATGAACCATCTCTGCCCTGATTACTGTATCATAACAGGTATTTTCTTATTAGATGCTGCGGTCacctgaaaataaactgaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K24885 HMBOX1; homeobox-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130139 lncRNA upstream 106747 9352373 ~ 9352587 (+) True G104115
TU130080 lncRNA upstream 233156 9223185 ~ 9226178 (+) True G104079
TU130060 lncRNA upstream 300115 9158321 ~ 9159219 (+) True G104062
TU130061 lncRNA upstream 300149 9158321 ~ 9159185 (+) False G104062
TU130013 lncRNA upstream 488564 8967878 ~ 8970770 (+) True G104029
TU130182 lncRNA downstream 6662 9474174 ~ 9475843 (+) True G104147
TU130186 lncRNA downstream 10055 9477567 ~ 9481674 (+) True G104150
TU130260 lncRNA downstream 225632 9693144 ~ 9746864 (+) True G104204
TU130278 lncRNA downstream 405141 9872653 ~ 9872890 (+) True G104221
TU130296 lncRNA downstream 802292 10269804 ~ 10271863 (+) False AMCG00011089
AMCG00011067 mRNA upstream 19543 9435209 ~ 9439791 (+) True AMCG00011067
AMCG00011066 mRNA upstream 29254 9425182 ~ 9430080 (+) True AMCG00011066
AMCG00011065 mRNA upstream 50320 9391398 ~ 9409014 (+) True AMCG00011065
AMCG00011074 mRNA upstream 68233 9344531 ~ 9391101 (+) True AMCG00011074
AMCG00011064 mRNA upstream 114921 9326329 ~ 9344413 (+) True AMCG00011064
AMCG00011076 mRNA downstream 65520 9533032 ~ 9549520 (+) True AMCG00011076
AMCG00011075 mRNA downstream 84292 9551804 ~ 9557387 (+) True AMCG00011075
AMCG00011081 mRNA downstream 99008 9566520 ~ 9574704 (+) True AMCG00011081
AMCG00011080 mRNA downstream 107617 9575129 ~ 9581745 (+) True AMCG00011080
AMCG00011079 mRNA downstream 123560 9591072 ~ 9592187 (+) True AMCG00011079
TU129898 other upstream 906729 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 2538403 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 2816706 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 4816976 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 5375748 4049938 ~ 4083586 (+) True G103078
TU130204 other downstream 62962 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 1351176 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 2198686 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 2341334 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 2374617 11842129 ~ 11844089 (+) True G104435

Expression Profile