RNA id: AMCG00011066


Basic Information

Item Value
RNA id AMCG00011066
length 3572
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00011066
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9425182 ~ 9430080 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGGGTAGGTACAGAGATTAGTTTCAGCCCAGCAGCGTGATCCAAACGGCCTGCGCGCTGTGGTGCACGGTGGTCAAGATTGCGTTTCAGGTCGGGTTGTTCTCTCAGCTGGTCACGGAGATGGGGTTATTGGCGTTAATCGCCTCACTTTGTATTGTTGCTTTACCTGCACCGATCTCCGCCAAAAGTATCGGCCATCGCAGGGAAAACCCTCCAGAGTCTGCCACTATTCTGCAGAACATATGGCTGGTTAATGCGCCTTTCCGTGAGGACTCGGTGGATGGCTTTGCTGAGCCCGACATTGGAAACCACGCTGCGTATCCGGCGCCCCCTGCAAACCATCGGGCAATGCCCCCTCCCGAGGAACAACAAGTGGTGGTGTGGTGCAGCGGAGACACCATCTCTCTCCGGGTTAAGAAGATGATGAGGGCAGTGGAGCTCAAACGCAAGGAACTGACTTTAGGGTCGGGATGCAAAAGCAATGGGGTTTCTGGAAACGAGTTCTTCTTTACTTATAGTCTGAGCGAGTGTGGGACCAAGCGATCGATGTGCCATGGAAAAGTGGTCTACAGCAACGTCCTTCACTACCTTCCATCTGCAAGTAAAAGTCCTATTCGGAAATCCAGCCCTTTCAATGTGCCTATAAAATGTACTATGAATAGGTTCCCCCAAGATGAAGTGGCTCCCTCCATCAAAGGACACCATTTGAATAAGAACATGCCTGGCTTTACTCTTCGGACCATGCATGaagATTGGATTGGTGAGGCCAACACTAATGTATACTACCGAGGGAAGCCCATCCATTTCCAGGCCACTGCTCAGCTCCTCTCCAGTGAGCAGAGACTCTTCATTCAGTCTTGCTATGCCACATCATTGCCAGATCCAAACTCCAGACCCAGATCTAAAGTAATTGTCAAAAAAGGGTGCATGCCAGAGCAAATCCCCGGGGGCTCTCGGGCTAGGTTTGTTGCACCTAGAACAAAGAACACCATCAACTTTGTGGTCAATGCATTTGGTCTGCAGTCTTCAGAGATCTACATGCACTGTGTCCTGGTAGCAGTTAATAATCGCAAAGTAACGGAAGGTACCAAATCATGCAACTATAACTATGCCAAAAAAAGGCaagctttttctttcccttccctcttgaaaatGTGGGAGGAACTGGATGGTAACCATGCTGCATGCAAGTGCTGCAGGGAACAATGCGCAAGCTCGGGCTTGAAATCCTTACTAAAAGCTTCCAGAGTAAAACTCCGCACTGGGCCTCTCATCATCTTGGCTGACTCTCAGAGTTTTCCAAAAGAGAAGTGGGATCTAAAGCAACCAAAATCTCATAAACATTCCAAAGCTATGAAGTGGTCTTCTTTGCAGGAGACCAAGGTGAAGAATGCCAAGAGAGAATCTCCTAAAGCAAGGAAGGAATACTATGCTTTTGATCCTGTAGTGTCTCCTGAATATGGGATTATCTCTTCCAAAGGGCCTGTTGCTCCTGAGGGCCAAATGGAAGCTCAACCACTTCCCCTGGAGGACTCGGAAGGGTTTCAGGAGGACTGGAGTTGGAATGTTGAAGACTTTGCACCCAAGGATATGGGTAGACCCCAAATCGGCCCCATGGAGCAAGACTGGAATATCCCTTTAGCAGATGGAAACCTTGATGTGATCTTCCTGATGCAAAGTGATGAGTCTCTTGGCAATCAATGGGCTCATGCAGAGCATAGGTTTGGCTCTGTGGAGTGGTTTGAAGGAGAGGAGCCAGTGTCTGAGGCAGCTGCTGAATTGGACTTTGACAGGAGTTTCACTCTGCAGAGCGATGTTTCCAGGGATGTCAAGGTGCCTTTCCTCTCTTTTTCAAAGGAGGAGCCAGTGTTGGTGGGTTGGGATATGGTGGAGATGGATGAGTTTCAAGGCCATGAAAAAGCTAGTGAAGGGAATTGGGATTATCCTTCATCTTCCACAGACCTGCAAAATGAAGTTCCAGGACGCATTGACCTTATTTTTCGGTCTCCTGCCATTGAAATCAATGATTATCCAGCATCCCCTTCTGGACAGCTGACCAGAAACGGGAGAGGGAAGCGACTGGGTAAGAACTTGAGGACAAAACCTACAAGCCATAAAACCAGCAGACCTTTATTCCATGATGTTTTCTCTGAAAACATGTCAAAGCTGAATGCCAAATCGGAATTCTATAACTGGGAAGGCTATTCAGTGAGGCAGAGTGACTGGTTTCTGAATCAAACCCCTCGGCAAGAGAAGAGCCTTCCCCTAAGAAAAGCTGTACTCCAGGAAAGCAAGAACTTAAACTCTGATCCATTGGCCGTCTTCCGTTCCATTTTAAAGCTGGCTGAGTCTCCAGAGAAGACTAGGAGCCTGGAATACAAAGTGGAGAGGGTGGACTTTGATGGGGACAATATTGTCCCCGAGTGGAGGAGTGTTGCTCTTGCCTGGGAACATGAGGCCCAGCCACCAAATCTGAGGGATCTGCTAGGATTATCCAGGGCAGAGTAGGGAGGCATATCCCCttctgtgatttaattgaattttgtaATGTGCGAATGTGgactaaactttttttttttttttttgagtaaCTAATAAAATTTGAAATGGCTTTTGGCTTATGGAATTCATGGGGAGGAACCCAATGTCTTGGTCTTTCCCCACTtgggttttaaatatttgtgctCCAACATTATAAACCCATAATCAACTTCTGATGTTCGACACTACTTTTTGTATAGGGCTAATGTgctccttaaataaataaaaatacaaatctgatctCACAATTTAAGATTCTTAATGGTTAGTATTAACATCGTTGATCCAGCTTGAGTCTTTGAATCTCCCCAATGGCGATATAAGTAGCTGCACCTGACTTGATGGTTAAATATTGGTTTCTCAGGCAGACCAATTTAATAGTTAAAACTATGTTTTAAATGGGGAAACCAGTGCTTAACTTCAGCAATGATGCTCAACACTGACTATGCTTAAAGAAATTGTAAGTGTAGGAGGgatgagtatttatttttattcccctCTCTCTTGGCTGGTTGTGGAATGTGCTTTTAGGAGGTACAGTGGGGTAAGGAAAACATCTGATTCATGACAAAGGTGTCACTGGGAGAACAAGCACACTAGGGCTATCATACTGCTGGATTCCATAAATTGGTCTTAATTTGTACTGATTGCATAGTTTGCTAGATCCCTATCATGGGTACACTTAATGGGTAATTATGCATTTACCGGTTAAGTAGGATCTGTAGTTTAGCTTTGTTAATTTGTCAATATATACCATTTTGGaggattaacttcaattaaacaatgATTGCAATATCCCTTTTGTTTCCTGGAAAGATTTTAGGGTTTTAACTGAAATAGTTAATAAAGCTCACAAACAACCAAAGCATGTAGTTACTCTTAACCCTAGCTGCAGGGGACCCTGTTCTACTTGTATTATACTTACTTtggattttgtattatattcCTGCACTTTTATATTGCTCCTGTAACCTGTAAATTATCCTGGGTCAGGACATTTGCCAAGAAGAAATAAAGTACATGGTTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130139 lncRNA upstream 72595 9352373 ~ 9352587 (+) True G104115
TU130080 lncRNA upstream 199004 9223185 ~ 9226178 (+) True G104079
TU130060 lncRNA upstream 265963 9158321 ~ 9159219 (+) True G104062
TU130061 lncRNA upstream 265997 9158321 ~ 9159185 (+) False G104062
TU130013 lncRNA upstream 454412 8967878 ~ 8970770 (+) True G104029
TU130182 lncRNA downstream 44094 9474174 ~ 9475843 (+) True G104147
TU130186 lncRNA downstream 47487 9477567 ~ 9481674 (+) True G104150
TU130260 lncRNA downstream 263064 9693144 ~ 9746864 (+) True G104204
TU130278 lncRNA downstream 442573 9872653 ~ 9872890 (+) True G104221
TU130296 lncRNA downstream 839724 10269804 ~ 10271863 (+) False AMCG00011089
AMCG00011065 mRNA upstream 16168 9391398 ~ 9409014 (+) True AMCG00011065
AMCG00011074 mRNA upstream 34081 9344531 ~ 9391101 (+) True AMCG00011074
AMCG00011064 mRNA upstream 80769 9326329 ~ 9344413 (+) True AMCG00011064
AMCG00011062 mRNA upstream 127531 9292633 ~ 9297651 (+) True AMCG00011062
AMCG00011055 mRNA upstream 270003 9141598 ~ 9155179 (+) True AMCG00011055
AMCG00011067 mRNA downstream 5129 9435209 ~ 9439791 (+) True AMCG00011067
AMCG00011063 mRNA downstream 29254 9459334 ~ 9467512 (+) True AMCG00011063
AMCG00011076 mRNA downstream 102952 9533032 ~ 9549520 (+) True AMCG00011076
AMCG00011075 mRNA downstream 121724 9551804 ~ 9557387 (+) True AMCG00011075
AMCG00011081 mRNA downstream 136440 9566520 ~ 9574704 (+) True AMCG00011081
TU129898 other upstream 872577 8548363 ~ 8552605 (+) True G103939
TU129402 other upstream 2504251 6917766 ~ 6920931 (+) False AMCG00010990
TU129373 other upstream 2782554 6641983 ~ 6642628 (+) True G103542
TU128904 other upstream 4782824 4638432 ~ 4642358 (+) False AMCG00010922
TU128774 other upstream 5341596 4049938 ~ 4083586 (+) True G103078
TU130204 other downstream 100394 9530474 ~ 9533414 (+) False AMCG00011076
TU130349 other downstream 1388608 10818688 ~ 10819423 (+) True G104273
TU130500 other downstream 2236118 11666198 ~ 11671340 (+) True G104382
TU130563 other downstream 2378766 11808846 ~ 11810696 (+) False AMCG00011115
TU130558 other downstream 2412049 11842129 ~ 11844089 (+) True G104435

Expression Profile