RNA id: AMCG00011068


Basic Information

Item Value
RNA id AMCG00011068
length 2361
RNA type mRNA
GC content 0.47
exon number 8
gene id AMCG00011068
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9430586 ~ 9434597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCAGTTCCTCACAGTTGCCAAAGACAGACCACTGATTGGATTCAGTTAAAAACTGCAGCTGTGCGTCATGTtatctttctttaattttccCCACAACCTTAATTCCCAAATTGAAGCTATAGATGTCTCCCTACGGCTTCGGTTGGTTGTTTTAGGAGAATGCATGTCATGTTGCGTTATTGCGTCCTGGTGATTTTGGTAAGCACTTGGGTTTATGCAGCGCAGGTTAGAAAACCAGTCAAAGCGGAGAGTCTATCGGGCAGGTCGGTGCCCAGTGCGCTTTCACCACGGGGGAGCAGAGGCAACACCCCCCGCAAGAGCAGCAACATGGCAAGGCGGCCGACTGTCCAACGACCGCGGTTAAGGCTGCCCGAATTTGGGAACCCAGATGACCAGCGCCCCGACGTCGCAGCGGTCAAACCCGTGCCGGTGCGCAGCCCGGCGGCTCCTCTGCCTGCCAGCGTCAAAGATCTTCTGATTCCGCAAATCGCCAGCCTTCCCAAGCGTCCCGGCGGCCCTGTCCCAGAGGTGTCCCTGACTTGTTTGGACACCAAGATGATCGTGCGGGTCAAGAGGACATTCTACGGACTCGGTGCCACGTCTGCGCAGCTGACCCTCGGCAAGGGGTGTAAGAACAACGGCATCCTGCGGGGCTCCGGAGACTTTCTCTTTAGGTACTCGCTGCAGGATTGTGGGACGCGCCGACTGTCTACCCCTGGGTACATCGTGTACAGAAACGTTATTCGCTATGTCCCAACAAAACGATGGGGTCCAGTCCGGAGGTCTCAGAGTATTGACGTGGGAGTTAAGTGCCGTTATAAAAGGTTTCATTACTCCTACAAGCTTGCTGTTCATCCAACATGGCAACCAGCAACCCTGGTGAAGACCTTGGAGGGTGAGGAGGGCCATTTTGGACTGAAGATCATGAATGATGATTGGACAGCATATGCGGTGTCCAATGTATACACCCTGGGGCAAGTGGTCAACTTCCAAGCCAGAGTGAATCGGGGAACAACAGGAGGAGAAGCAAAGCTGTACCTCAAATCTTGCTATGTGACACCATCGTACTATCCCAATTCCAAGCAGGCTTTCTCTGTGATTCAGAACTATGGTTGCATGGTGGACAGCAAGGTGAGAGGCAGTCGTTCCAAGTTTGTACCCCCCAGAACTGTCAGTACAATAAACTTCTCCATTGATGCTTTCCAGTTTAGAAAGAGGTCCTCCTATAAGGTCTATCTTCACTGCACAATGTTCATTACGAAAGATGCCATCAGTCCCACTGCCAAGGCCTGTACCTATAACCACAAAAGAATAAGGTGGGAAGAAGTAGAAGATATTGAAAGCAGGGTATGTGAATGCTGCAACTCCAAATGTACTGCTCCAGAGGCTTCACCTGTGGCTATGGACGTGCAGTCCAGTGGTCCTGTCATAGTTGATGGCAGCAGGCCAATGCAGGAGGAAGACCAGTTTCCCAACATCTCGGTCTCTGAAGATGCCCAGCTTCCTTCTGCTGAAGAGTGGAAGTCTACGAAGCATGATGAAGACTTCGGTCCTGTGTCTGAGAGCTACATGGAGATGCTTCCAAATGAGCACCAGCagcaggaggagaggagggataAGGAGGAGAAACTCTTAGAGTATGGCATCTAAAATTAAACTGGTTGCATTGAAGAACTTGATCTGTTGCCGACTTATTGCTTCTCTTTAGGATCTCTCAGGTACAGATCTTTATTCCACTGATTCAAGCAACATGTGCTCGTCTGTGATAAACTCTACAAAGTTGTCCTACAAAGCCTGACTACATATCCTAGATGTGCTGAGAATCTTGAATCCACATCATAATAAAAGTGGATGCAATCCTTTCATCCTAATTCATTGATCTTTTTCCTTGTTGATAATATAAATCTTGCCTGTCTATCCTATGATTTCTGAGCTGTACATTAATGCAGGGATATTGGTGAGTTTCCCACAAACTATACCTTTTGAACAATGGGTTTAACATTGTTTTGCTAATTAGAATATCCTTCACTCTGATAAAGTGGAAAGTAACTATTGCCATTTAGTCAACAATTGCCAAATGTATAAATCTAGTACACAAAACCATATGAAAGTATACTCCTAttcatatattacatttttaaccaggaaaaaatatttccaaCCTGTAAGGAATCTACAGGACTAGagtgaatcaataagatgtttgtCTAATGGTAATTTAATAATCTAGAGAAACCGGTGCAGGAGATCTAGAGGATCCCTTAGCTCTGTGTAGGTTCTGAGCCCAGAGCAAAAATTGGTGTGGTTATTTATAGATTAAGTGAACAAAGAAAAGCCTGtatatgggaataattaggaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130156 lncRNA downstream 17664 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 165099 9237791 ~ 9265487 (-) True G104098
TU130052 lncRNA downstream 465007 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 465305 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 580625 8845964 ~ 8849961 (-) False AMCG00011051
TU130348 lncRNA upstream 1288993 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1511404 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 1981593 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 1986152 11420749 ~ 11426225 (-) True G104319
TU130443 lncRNA upstream 2076626 11511223 ~ 11593619 (-) True G104341
AMCG00011073 mRNA downstream 6843 9415082 ~ 9423743 (-) True AMCG00011073
AMCG00011061 mRNA downstream 121315 9299997 ~ 9309271 (-) True AMCG00011061
AMCG00011060 mRNA downstream 169772 9254133 ~ 9260814 (-) True AMCG00011060
AMCG00011059 mRNA downstream 180718 9239361 ~ 9249868 (-) True AMCG00011059
AMCG00011058 mRNA downstream 194358 9222268 ~ 9236228 (-) True AMCG00011058
AMCG00011069 mRNA upstream 4390 9438987 ~ 9444334 (-) True AMCG00011069
AMCG00011070 mRNA upstream 21294 9455891 ~ 9460295 (-) True AMCG00011070
AMCG00011072 mRNA upstream 34079 9468676 ~ 9473075 (-) True AMCG00011072
AMCG00011071 mRNA upstream 39960 9474557 ~ 9488647 (-) True AMCG00011071
AMCG00011078 mRNA upstream 54945 9489542 ~ 9499083 (-) True AMCG00011078
TU130111 other downstream 194393 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 566920 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 566920 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1411064 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3682022 5704770 ~ 5748564 (-) True G103395
TU130252 other upstream 167287 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 306536 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2560816 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2632868 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 2891500 12326097 ~ 12328282 (-) True G104629

Expression Profile