RNA id: AMCG00011069


Basic Information

Item Value
RNA id AMCG00011069
length 2256
RNA type mRNA
GC content 0.44
exon number 2
gene id AMCG00011069
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9438987 ~ 9444334 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACCGCGCCTCCCGCCACAGAGCAACTTCGGCTCCCGTCAGGACGGCGGTACACACCTGCGCCGACGAAACCAGGACGGGCCGCTTATAGCGCATCTGCGGACGATATCCGCCATCGGATgtttccaaaaaaaaaaaaacagaaaggaaagaaatcaAAGCCAGAATCATGGACTGGAAGACCTTCCAAGCACTTCTCAGCGGAGTCAATAAGTACTCCACTGCGTTTGGCCGCATCTGGCTGTCGGTGGTTTTTGTGTTCCGGGTGATGGTGTATGTGGTGGCAGCCGAGAGGGTATGGGGTGATGATCAGAAGGACTTTGACTGTAACACCAAGCAGCCAGGTTGCGCCAACGTCTGCTATGACTACTTCTTCCCTATCTCCCACATCCGCCTGTGGGCCTTGCAGCTCATCTTTGTGACCTGCCCCTCGTTAATGGTGGTGATGCATGTGGCGTACCGAGACGACCGCGAGCGCAAGTACCAGCTGAAGCACGGCGAGAATGCCAAGCTCTATCAGGACACAGGCAAGAAGCACGGTGGCCTGTGGTGGACCTACCTAATCAGCTTGTTCTTCAAAACTGGCATCGAGATCGCCTTCCTCTACCTCCTGCACCTCATCTACGACAGCTTCTACCTGCCGAGGCTGGTCAAGTGCCAGATCGATCCCTGCCCCAACGTGGTGGACTGCTACATTGGGCGGCCCACCGAGAAGAAGATCTTCACTTACTTCATGGTGGGCGCATCTGCCTTCTGCATCGTGCTCAATATCTGCGAGATCATCTACCTCATCTTCAAGAGGGTTTTTGGCTTCGCCCACAGGATGAGAGGCAGGAACAGGCGCTCCCCTGACCCTCACAACCATGGCGATGAGAAAGACCACGAGTGTGAGTGCAATCTGAAGATGACCCGCACTGATTTCAAACCCAGAGTCAACGAGGAGCTGCGAGCATCTGCACCAAACCTCTCCAGTGCAGCATAGGACCTCCTCTGCCACTTTTCACTTCAAAGACTTGGGTACTACCCACCCCTGCATTCACATGATTGCTCTTACagtaaatacactttaaaaggACAAAGTTTTTTTCCTGTTAGGTCATTGCATTTTTCTCGTCTCAAGTTGGTGCTGCAGTGCAATAGTGCCATTGACTCACAAGACAAGAATCTGCAGAGGTCTAGAGACACTCAAATGGACAATCCAGTGTGGGCTATTCATACTCAAAGGGAGACAGTCCTAGCTAGGTGTGTCTAACAACCAGAACAAAGGAGGATACATTTCAGAGGAGAAGCTTCCAATACCATGAGTTTACAGTAACCAGAACAAaatagaatgtatttaattgtttcctAAACAATGAATTAAACATGCATACTATTTTATATACTTCTATACTTgataaaatcataatatttgATTCCAATGACTAATTAACATTCTAATTTAGCATGTGAACTATAATTCTTTTGGGCTTCgactgtaattattttgataaaaacaattactcatatcagtcagtcagtcctgCGCATCCGCTCTGTTTTAGTACACATTTTCTATTCTGAAAGCTTTGCAAGTATTAACAGATCTTggaaggggaaaacaaatgaGACATCTCTCCATGAATGTCCAGAACAAAAGGAACAACAATAGCTGGACAACCATGGTTGAGCAAAGACAAGCAACGGGTCTGCCTAGAGCACCACGTCAGTACCGAATTGAGCTCCACTGTTTGTCACCTTGactgtacagtttttattacacaatgaCATGGCATTTGACGAACACTGAAGCGAATGGGAGAGGATAACTGGTATGGTGTTGTAGATCATGGAGAAGCAGCGccattgaaaagaaaaggaagactATTGACAATTCCTAATACAGCTAAAGCAGAACTAACCCTGCCTCTGCCAAAGAACAAACTAcaccaatgtatatatattgcatttactGTACTACAATATGATgccacaatgtgtttttaattgtgctcTAGTTCTCTTTTTCATTTAGGGAATGGCTAGGTTTTAGACTAATTCCAAAAATTAGTAAAACCTGATGACTGATTTCTTGACTggcacttaaataataataattaaaatctggaaagttattttatttttaaaaacctttccCACAATTGTGTGGCCTTAATTGTAAAAACCATTTCAGGGAGGGagtaacttatttttttgtacacatTTGTCCATATTGTTTGTACTTTATCAAtgaaaactaataaacaaaacaaaaagtt

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K07622 GJB3, CX31; gap junction beta-3 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130156 lncRNA downstream 26065 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 173500 9237791 ~ 9265487 (-) True G104098
TU130052 lncRNA downstream 473408 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 473706 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 589026 8845964 ~ 8849961 (-) False AMCG00011051
TU130348 lncRNA upstream 1279256 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1501667 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 1971856 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 1976415 11420749 ~ 11426225 (-) True G104319
TU130443 lncRNA upstream 2066889 11511223 ~ 11593619 (-) True G104341
AMCG00011068 mRNA downstream 4390 9430586 ~ 9434597 (-) True AMCG00011068
AMCG00011073 mRNA downstream 15244 9415082 ~ 9423743 (-) True AMCG00011073
AMCG00011061 mRNA downstream 129716 9299997 ~ 9309271 (-) True AMCG00011061
AMCG00011060 mRNA downstream 178173 9254133 ~ 9260814 (-) True AMCG00011060
AMCG00011059 mRNA downstream 189119 9239361 ~ 9249868 (-) True AMCG00011059
AMCG00011070 mRNA upstream 11557 9455891 ~ 9460295 (-) True AMCG00011070
AMCG00011072 mRNA upstream 24342 9468676 ~ 9473075 (-) True AMCG00011072
AMCG00011071 mRNA upstream 30223 9474557 ~ 9488647 (-) True AMCG00011071
AMCG00011078 mRNA upstream 45208 9489542 ~ 9499083 (-) True AMCG00011078
AMCG00011077 mRNA upstream 64250 9508584 ~ 9516296 (-) True AMCG00011077
TU130111 other downstream 202794 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 575321 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 575321 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1419465 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3690423 5704770 ~ 5748564 (-) True G103395
TU130252 other upstream 157550 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 296799 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2551079 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2623131 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 2881763 12326097 ~ 12328282 (-) True G104629

Expression Profile