RNA id: AMCG00011072


Basic Information

Item Value
RNA id AMCG00011072
length 679
RNA type mRNA
GC content 0.55
exon number 8
gene id AMCG00011072
representative True

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 9468676 ~ 9473075 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAGAAACTAAGCCCACTCCACGTGTTCACGGCTGGACTGGGAGGAGGGCGGGACCTGCACCGGAAGGGGCGGGCTGAGTTGTCGGGTCAAAGGGTAAAGGATACTGGCAAGATGGCCGCCGCCAAACGTGTACTTTATGTTGGCGGGCTGGCGGAGGAGGTGGATGAGAAAGTGCTACACGCTGCCTTCATCCCTTTTGGTGACATCACTGACATCCAGATCCCCCTTGATTATGAGACAGAAAAGCACAGGGGATTTGCCTTCATTGAGTTTGAGATGGCAGAGGATGCTGCAGCAGCCATCGACAATATGAACGAGTCGGAGTTGTTCGGCCGAACGATCAGGGTTAACATTGCCAAGCCCATGAGGATCAAAGAGGGCTCCTCACTCTGGTCAGATGACGATTGGCTGAAGAAATTCTCGGGGAAGACCATGGAAGAGGCTGAAGGGGCAGAGCCAGCAGCAGAGTCGGCCAATCCAGAGACACAGGAGggCGAACCGCCAGCCAAGAAAGGTCGTGCCAATCCCCAAGTCTACATGGACATCAAGATCGGCAACAAGCCAGCTGGACGCCTGCGCTTTCTGCTGCGATCTGACATAGTTCCCATGACGGCAGGTTCAAAGGATGGCAAGCCCTCGCAGAAGGTGATCATTTCTGACTGCGGGGAGTACGTGTGA

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0006457 protein folding biological_process
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG:

id description
K09564 PPIE; peptidyl-prolyl isomerase E (cyclophilin E)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130156 lncRNA downstream 55754 9410589 ~ 9412922 (-) True G104126
TU130116 lncRNA downstream 203189 9237791 ~ 9265487 (-) True G104098
TU130052 lncRNA downstream 503097 8965372 ~ 8965579 (-) True G104055
TU130051 lncRNA downstream 503395 8964717 ~ 8965281 (-) True G104054
TU129987 lncRNA downstream 618715 8845964 ~ 8849961 (-) False AMCG00011051
TU130348 lncRNA upstream 1250515 10723590 ~ 10723956 (-) True G104272
TU130354 lncRNA upstream 1472926 10946001 ~ 10946274 (-) True G104278
TU130406 lncRNA upstream 1943115 11416190 ~ 11420103 (-) True G104315
TU130411 lncRNA upstream 1947674 11420749 ~ 11426225 (-) True G104319
TU130443 lncRNA upstream 2038148 11511223 ~ 11593619 (-) True G104341
AMCG00011070 mRNA downstream 8381 9455891 ~ 9460295 (-) True AMCG00011070
AMCG00011069 mRNA downstream 24342 9438987 ~ 9444334 (-) True AMCG00011069
AMCG00011068 mRNA downstream 34079 9430586 ~ 9434597 (-) True AMCG00011068
AMCG00011073 mRNA downstream 44933 9415082 ~ 9423743 (-) True AMCG00011073
AMCG00011061 mRNA downstream 159405 9299997 ~ 9309271 (-) True AMCG00011061
AMCG00011071 mRNA upstream 1482 9474557 ~ 9488647 (-) True AMCG00011071
AMCG00011078 mRNA upstream 16467 9489542 ~ 9499083 (-) True AMCG00011078
AMCG00011077 mRNA upstream 35509 9508584 ~ 9516296 (-) True AMCG00011077
AMCG00011084 mRNA upstream 128302 9601377 ~ 9619279 (-) True AMCG00011084
AMCG00011086 mRNA upstream 269273 9742348 ~ 9742623 (-) False AMCG00011086
TU130111 other downstream 232483 9234411 ~ 9236193 (-) False AMCG00011058
TU129989 other downstream 605010 8819551 ~ 8863666 (-) False AMCG00011051
TU129988 other downstream 605010 8854905 ~ 8863666 (-) False AMCG00011051
TU129762 other downstream 1449154 7971624 ~ 8019522 (-) False G103832
TU129184 other downstream 3720112 5704770 ~ 5748564 (-) True G103395
TU130252 other upstream 128809 9601884 ~ 9602741 (-) False AMCG00011084
TU130270 other upstream 268058 9741133 ~ 9743785 (-) True AMCG00011086
TU130712 other upstream 2522338 11995413 ~ 11997786 (-) False AMCG00011140
TU130749 other upstream 2594390 12067465 ~ 12069079 (-) False AMCG00011135
TU130831 other upstream 2853022 12326097 ~ 12328282 (-) True G104629

Expression Profile